Items per page:
Showing results 1 to 25 of 23545
IDAccessionAssay nameAssay titleBiosample classificationTargetTarget of assayTarget gene symbolBiosample summaryBiosample term nameDbxrefs
Description
LabProjectStatusFilesRelated seriesBiosample accessionBiological replicateTechnical replicateLinked antibodyOrganismLife stageBiosample ageBiosample treatmentBiosample treatment ontology IDBiosample treatment amountBiosample treatment amount unitsBiosample treatment durationBiosample treatment duration unitsSynchronizationPost-synchronization timePost-synchronization time unitsBiosample modification site target organismBiosample modification site introduced gene organismReplicatesMixed biosamplesCellular componentLibrary construction platformLibrary construction method
ENCSR220XSMENCSR220XSMPRO-capPRO-capcell lineHomo sapiens K562K562A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in K562 cells.Haiyuan Yu, CornellENCODEreleasedENCFF583FVG, ENCFF155YEA, ENCFF298PQK, ENCFF084GIA, ENCFF191TQL, ENCFF131OEV, ENCFF633JKZ, ENCFF082TEE, ENCFF850NZE, ENCFF364CCA, ENCFF918QKQ, ENCFF861JFD, ENCFF051LUE, ENCFF963WTDENCBS165TOO11, 2Homo sapiensadult53 years/replicates/9938ce82-a8ca-4175-869c-a23bc9174ed2/, /replicates/3f19928c-14fd-4cfc-9f9e-4cec84014941/capped RNA enrichment
ENCSR558BNWENCSR558BNWHiCintact Hi-Cprimary cellHomo sapiens CD8-positive, alpha-beta T cell male adult (21 years)CD8-positive, alpha-beta T cellCD8 resting intact Dnase HiC LP10Erez Aiden, BaylorENCODEreleasedENCFF657QRS, ENCFF646TXN, ENCFF063KHP, ENCFF694QLT, ENCFF398ZDC, ENCFF336ZKS, ENCFF873XRE, ENCFF532RZR, ENCFF439WDTENCBS710VUX11, 2Homo sapiensadult21 years/replicates/2fa169e7-50f6-4f68-9e20-54beed78444b/, /replicates/b513ffd9-3bfe-45bf-bed1-e4f8ffd24cb7/
ENCSR836MWKENCSR836MWKHiCintact Hi-Cprimary cellHomo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hoursactivated CD4-positive, alpha-beta T cellCD4 acticated intact Dnase HiC LP6Erez Aiden, BaylorENCODEreleasedENCFF118NWW, ENCFF150RDU, ENCFF386BXY, ENCFF372HJS, ENCFF247JCX, ENCFF407JPA, ENCFF946UFJ, ENCFF169BLJ, ENCFF384SGCENCBS856QVV11, 2Homo sapiensadult20 yearsanti-CD3 and anti-CD28 coated beads36hour/replicates/b04e8c6f-23c5-4522-869d-01693212dda7/, /replicates/a42eb993-e372-4e75-868a-a4685a0a3c37/
ENCSR902BCWENCSR902BCWHiCintact Hi-Cprimary cellHomo sapiens activated T-helper 1 cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 1 μg/mL Interleukin-4 antibody for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hoursactivated T-helper 1 cellNaive CD4 Th1 activated LP18 intact Mnase HiCErez Aiden, BaylorENCODEreleasedENCFF823JPS, ENCFF768BMK, ENCFF070GSZ, ENCFF624ZZI, ENCFF903PDA, ENCFF391OJM, ENCFF941RPC, ENCFF610AYI, ENCFF546HXQENCBS951MKM11, 2Homo sapiensadult35 yearsanti-CD3 and anti-CD28 coated beads, Interleukin-12 subunit beta, Interleukin-2, Interleukin-4 antibody, Interleukin-12 subunit alphaUniProtKB:P29460, UniProtKB:P60568, UniProtKB:P2945930, 10, 1ng/mL, μg/mL24, 36, 14hour, day/replicates/e773137e-fd3c-4fba-a86b-70a9c0a78b32/, /replicates/189afdb9-9dd2-408a-91f5-af7fea3a31ba/
ENCSR949ZZDENCSR949ZZDHiCintact Hi-Cprimary cellHomo sapiens T-helper 1 cell male adult (35 years) treated with 30 ng/mL Interleukin-12 subunit beta for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours, 1 μg/mL Interleukin-4 antibody for 36 hoursT-helper 1 cellNaive CD4 Th1 Resting LP18 intact Mnase HiCErez Aiden, BaylorENCODEreleasedENCFF820SDQ, ENCFF989WHN, ENCFF717SQH, ENCFF723KMI, ENCFF118XNF, ENCFF056HNB, ENCFF654GEN, ENCFF680JQH, ENCFF168ZTHENCBS853JPU11, 2Homo sapiensadult35 yearsInterleukin-12 subunit beta, Interleukin-12 subunit alpha, Interleukin-4 antibodyUniProtKB:P29460, UniProtKB:P2945930, 1ng/mL, μg/mL36hour/replicates/5740425b-192c-4836-8560-5553baca4af8/, /replicates/0bbac4e4-7638-4b5a-b0f0-f891fb57e493/
ENCSR309KYAENCSR309KYAChIA-PETChIA-PETcell line/targets/RAD21-human/RAD21RAD21Homo sapiens HCT116HCT116Charles LeeENCODEreleasedENCFF908FUE, ENCFF529LTV, ENCFF518EIJ, ENCFF301QMJ, ENCFF769MZQ, ENCFF025POZ, ENCFF091BNH, ENCFF445IRW, ENCFF934SCM, ENCFF922YDM, ENCFF192IHHENCBS303KGS21ENCAB979JMOHomo sapiensadult48 years/replicates/4a9fc9a0-3ac5-420a-80a0-fc48c94b6ced/
ENCSR028AOMENCSR028AOMChIA-PETChIA-PETcell line/targets/RAD21-human/RAD21RAD21Homo sapiens HCT116HCT116Charles LeeENCODEreleasedENCFF626YXT, ENCFF952WNJ, ENCFF923BLG, ENCFF184HZN, ENCFF625LBL, ENCFF974WVJ, ENCFF803SZB, ENCFF270AAA, ENCFF209UVB, ENCFF281IIG, ENCFF849NNVENCBS828MWC21ENCAB979JMOHomo sapiensadult48 years/replicates/f3c207e3-6517-4aaf-97ef-6bb44490976b/
ENCSR355CTRENCSR355CTRChIA-PETChIA-PETcell line/targets/RAD21-human/RAD21RAD21Homo sapiens GM12878GM12878Charles LeeENCODEreleasedENCFF950WWG, ENCFF802MYF, ENCFF416RNE, ENCFF253ULY, ENCFF043ORZ, ENCFF385LYS, ENCFF324MAM, ENCFF827AXP, ENCFF915EOK, ENCFF809JCD, ENCFF220INKENCBS021YGS21ENCAB529YRCHomo sapiensadult/replicates/00d409be-57dc-49cd-b56f-690b5fe64a0b/
ENCSR764VXAENCSR764VXAChIA-PETChIA-PETcell line/targets/SMC1A-human/SMC1ASMC1AHomo sapiens GM12878GM12878Charles LeeENCODEreleasedENCFF112ESB, ENCFF445RAI, ENCFF721IWN, ENCFF892BLX, ENCFF275ZHL, ENCFF357CVD, ENCFF745BDW, ENCFF928HSD, ENCFF228ODA, ENCFF124UJI, ENCFF461YYOENCBS781HHE21ENCAB764HRIHomo sapiensadult/replicates/fc94c709-1d7c-4be1-9d57-8b1a25c4e5ee/
ENCSR515SNHENCSR515SNHsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (84 days)heartMichael Snyder, StanfordENCODEreleasedENCFF871WLY, ENCFF468VAM, ENCFF692YAN, ENCFF352YRT, ENCFF018QRL, ENCFF003FBC, ENCFF592HCL, ENCFF054RZG, ENCFF454GYN, ENCFF021CSA, ENCFF401MVSENCBS835WTE11Homo sapiensembryonic84 days/replicates/bc34a208-9dd8-40a1-b9ec-1a13cffff283/nucleus10X Genomics Chromium Controller
ENCSR715JSZENCSR715JSZsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction male embryo (94 days)heartMichael Snyder, StanfordENCODEreleasedENCFF900YGG, ENCFF341YZK, ENCFF688YDP, ENCFF837WLV, ENCFF511BDZ, ENCFF036VOK, ENCFF933RYY, ENCFF991WRG, ENCFF778FUB, ENCFF542LPL, ENCFF946HNMENCBS104EDP11Homo sapiensembryonic94 days/replicates/17c4395c-5f33-4b87-8eac-4fa0c9908a0b/nucleus10X Genomics Chromium Controller
ENCSR282FAKENCSR282FAKsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (120 days)heartMichael Snyder, StanfordENCODEreleasedENCFF779JYT, ENCFF296JKN, ENCFF184QTJ, ENCFF912IPD, ENCFF759QUX, ENCFF392OUK, ENCFF265HLA, ENCFF904ARJENCBS788CMM11Homo sapiensembryonic120 days/replicates/12d142dc-35ee-4dac-bd50-9ba347481b13/nucleus10X Genomics Chromium Controller
ENCSR890TGRENCSR890TGRsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (73 days)heartMichael Snyder, StanfordENCODEreleasedENCFF143FFW, ENCFF933ZBT, ENCFF787YHK, ENCFF436LDC, ENCFF413GWT, ENCFF082UJB, ENCFF609RJY, ENCFF658TEHENCBS539UEJ11Homo sapiensembryonic73 days/replicates/e192ad7d-5003-4837-af9f-a99975da7f9e/nucleus10X Genomics Chromium Controller
ENCSR024TGDENCSR024TGDsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction male embryo (103 days)heartMichael Snyder, StanfordENCODEreleasedENCFF588ERE, ENCFF473FGD, ENCFF024CBL, ENCFF167HPF, ENCFF543XRW, ENCFF864BVM, ENCFF292ZWV, ENCFF533VBC, ENCFF381GDR, ENCFF799OFD, ENCFF908JHSENCBS452UFQ11Homo sapiensembryonic103 days/replicates/c3a7a1f3-45f7-4b6d-8c3f-5041ab41d4bd/nucleus10X Genomics Chromium Controller
ENCSR004IAYENCSR004IAYsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (105 days)heartMichael Snyder, StanfordENCODEreleasedENCFF949SIR, ENCFF021GSU, ENCFF180BCO, ENCFF805BFM, ENCFF425IFQ, ENCFF716ALM, ENCFF851VTB, ENCFF664LNP, ENCFF337CQR, ENCFF557LJE, ENCFF949JTQENCBS534KHU11Homo sapiensembryonic105 days/replicates/6161abf1-5351-4fcb-8cdd-178a5c388ee5/nucleus10X Genomics Chromium Controller
ENCSR376IBIENCSR376IBIsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (115 days)heartMichael Snyder, StanfordENCODEreleasedENCFF289FLJ, ENCFF207IJF, ENCFF224DHC, ENCFF450YRB, ENCFF682AFX, ENCFF582BNN, ENCFF070HKH, ENCFF046FSI, ENCFF412CDO, ENCFF611TIE, ENCFF958UTAENCBS282BRL11Homo sapiensembryonic115 days/replicates/3891e6c5-63a3-489b-8f09-5a52c8ae0e87/nucleus10X Genomics Chromium Controller
ENCSR306FRQENCSR306FRQsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction male embryo (59 days)heartMichael Snyder, StanfordENCODEreleasedENCFF600ABV, ENCFF609HQK, ENCFF676PAK, ENCFF786ZBJ, ENCFF666UFQ, ENCFF611LUY, ENCFF832IKM, ENCFF118QMN, ENCFF939OGR, ENCFF214EVC, ENCFF575DGZENCBS092RCN11Homo sapiensembryonic59 days/replicates/181da0c5-4e50-4dbc-b8d7-e8addad555a3/nucleus10X Genomics Chromium Controller
ENCSR805DIDENCSR805DIDsingle-nucleus ATAC-seqsnATAC-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (127 days)heartMichael Snyder, StanfordENCODEreleasedENCFF563ADL, ENCFF456MTV, ENCFF982QAC, ENCFF151EBT, ENCFF194WSA, ENCFF936QVP, ENCFF539YLL, ENCFF202XSZ, ENCFF560SNL, ENCFF353WWC, ENCFF109FJXENCBS869CTV11Homo sapiensembryonic127 days/replicates/54663217-0bb4-4503-8c93-95f2c9dc1d18/nucleus10X Genomics Chromium Controller
ENCSR627MEAENCSR627MEAsingle-cell RNA sequencing assaysnRNA-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (84 days)heartMichael Snyder, StanfordENCODEreleasedENCFF497YAY, ENCFF757DMR, ENCFF277RQO, ENCFF814HAZ, ENCFF565WSB, ENCFF523WSI, ENCFF887HJU, ENCFF776DQR, ENCFF103HTJ, ENCFF142MTTENCBS835WTE11Homo sapiensembryonic84 days/replicates/321e22c5-14c9-40dd-8077-bdff55d7d3c8/nucleus10X Genomics Chromium Controller
ENCSR497FRIENCSR497FRIsingle-cell RNA sequencing assaysnRNA-seqtissueHomo sapiens heart tissue nuclear fraction male embryo (94 days)heartMichael Snyder, StanfordENCODEreleasedENCFF531MTV, ENCFF158UKY, ENCFF672ONG, ENCFF951LHO, ENCFF925ASB, ENCFF923KZY, ENCFF243UTL, ENCFF802AQC, ENCFF836FYS, ENCFF495MUCENCBS104EDP11Homo sapiensembryonic94 days/replicates/ae42f7cf-c306-4265-a686-78d0303a7ce0/nucleus10X Genomics Chromium Controller
ENCSR607AZPENCSR607AZPsingle-cell RNA sequencing assaysnRNA-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (120 days)heartMichael Snyder, StanfordENCODEreleasedENCFF144ZNW, ENCFF866XQC, ENCFF549BYR, ENCFF913MCP, ENCFF277YKC, ENCFF067VBC, ENCFF878AEW, ENCFF727JRO, ENCFF332KEW, ENCFF283KIZENCBS788CMM11Homo sapiensembryonic120 days/replicates/0aef3576-c384-4d64-9443-e31801bc0520/nucleus10X Genomics Chromium Controller
ENCSR268GBAENCSR268GBAsingle-cell RNA sequencing assaysnRNA-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (73 days)heartMichael Snyder, StanfordENCODEreleasedENCFF650DMQ, ENCFF826DSJ, ENCFF023JMQ, ENCFF304SUL, ENCFF204EMS, ENCFF020ZLH, ENCFF654KZX, ENCFF684YRB, ENCFF714HSX, ENCFF368HVKENCBS539UEJ11Homo sapiensembryonic73 days/replicates/961f4e59-7c33-497a-939b-557a14bcd4a1/nucleus10X Genomics Chromium Controller
ENCSR170SFRENCSR170SFRsingle-cell RNA sequencing assaysnRNA-seqtissueHomo sapiens heart tissue nuclear fraction male embryo (103 days)heartMichael Snyder, StanfordENCODEreleasedENCFF153QCI, ENCFF161GUP, ENCFF808LKA, ENCFF434PEN, ENCFF634JRS, ENCFF766GEG, ENCFF260ZOM, ENCFF248EWR, ENCFF567QZW, ENCFF739TMKENCBS452UFQ11Homo sapiensembryonic103 days/replicates/725f3d22-6935-4e7f-9e1f-71f6562b0e40/nucleus10X Genomics Chromium Controller
ENCSR571FEWENCSR571FEWsingle-cell RNA sequencing assaysnRNA-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (105 days)heartMichael Snyder, StanfordENCODEreleasedENCFF410QVG, ENCFF569GXX, ENCFF194FWT, ENCFF550PFS, ENCFF537IRU, ENCFF781UIT, ENCFF807XXG, ENCFF775ANN, ENCFF845AYB, ENCFF733IOEENCBS534KHU11Homo sapiensembryonic105 days/replicates/8d842b5e-090a-4bd3-be78-b72cc1362d7d/nucleus10X Genomics Chromium Controller
ENCSR252RYCENCSR252RYCsingle-cell RNA sequencing assaysnRNA-seqtissueHomo sapiens heart tissue nuclear fraction female embryo (115 days)heartMichael Snyder, StanfordENCODEreleasedENCFF211SQA, ENCFF345MDS, ENCFF257LRL, ENCFF822WZR, ENCFF024BUJ, ENCFF426WHV, ENCFF388YNA, ENCFF849ALE, ENCFF999CQQ, ENCFF561SCYENCBS282BRL11Homo sapiensembryonic115 days/replicates/907a6035-99b4-49de-af36-d6b14daaef22/nucleus10X Genomics Chromium Controller