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IDAccessionAssay nameAssay titleBiosample classificationTargetTarget of assayTarget gene symbolBiosample summaryBiosample term nameDbxrefs
Description
LabProjectStatusFilesRelated seriesBiosample accessionBiological replicateTechnical replicateLinked antibodyOrganismLife stageBiosample ageBiosample treatmentBiosample treatment ontology IDBiosample treatment amountBiosample treatment amount unitsBiosample treatment durationBiosample treatment duration unitsSynchronizationPost-synchronization timePost-synchronization time unitsBiosample modification site target organismBiosample modification site introduced gene organismReplicatesMixed biosamplesCellular componentLibrary construction platformLibrary construction method
ENCSR733DASENCSR733DASPRO-capPRO-capcell lineHomo sapiens HEK293T genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 treated with 500 nM dTAGV-1 for 6 hoursHEK293TA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in ZNF143_T cells.Haiyuan Yu, CornellENCODEreleasedENCFF186YGS, ENCFF499CKK, ENCFF073ULB, ENCFF148SBV, ENCFF117UKX, ENCFF117QMO, ENCFF188NDA, ENCFF462XCI, ENCFF726DCR, ENCFF603FIP, ENCFF793MKG, ENCFF023FGG, ENCFF399PVP, ENCFF252RLM, ENCFF023BDUENCBS868ZCQ, ENCBS997DQU1, 21Homo sapiensembryonicdTAGV-1500nM6hour/organisms/human//replicates/7f776445-0596-4133-9502-0db10d5de6ad/, /replicates/cf2af3e1-5278-469e-98ba-0a5e48bacc99/capped RNA enrichment
ENCSR473KVFENCSR473KVFPRO-capPRO-capcell lineHomo sapiens HEK293T genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143HEK293TA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in ZNF143_U cells.Haiyuan Yu, CornellENCODEreleasedENCFF857WRM, ENCFF083KAZ, ENCFF698VUR, ENCFF572DOI, ENCFF096RQZ, ENCFF223MZO, ENCFF868VAY, ENCFF832FIZ, ENCFF592ZIW, ENCFF748BAF, ENCFF122LLU, ENCFF236QNQ, ENCFF707DRY, ENCFF814JPR, ENCFF624QBAENCBS000SRU, ENCBS707ZIE1, 21Homo sapiensembryonic/organisms/human//replicates/d928db65-c741-4105-b3ab-d53d8465df3a/, /replicates/16b4c0ab-9175-4e70-870a-cbbba0e77618/capped RNA enrichment
ENCSR124AWEENCSR124AWEPRO-capPRO-capcell lineHomo sapiens SUDHL5SUDHL5A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SU-DHL-5.Haiyuan Yu, CornellENCODEreleasedENCFF757ZCO, ENCFF941RKE, ENCFF238DUR, ENCFF291FWH, ENCFF322UWJ, ENCFF646HUD, ENCFF780CWD, ENCFF248HFE, ENCFF378UKN, ENCFF981PND, ENCFF264SFZ, ENCFF797USK, ENCFF942OPG, ENCFF836NWL, ENCFF029UOGENCBS857PEG, ENCBS802SHU1, 21Homo sapienschild17 years/replicates/93e09029-5ec4-4725-9868-286347f6def1/, /replicates/05e04dc7-28a3-45f0-bbbe-d2abf32fc6af/capped RNA enrichment
ENCSR353ZXWENCSR353ZXWPRO-capPRO-capcell lineHomo sapiens SP-49SP-49A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SP49.Haiyuan Yu, CornellENCODEreleasedENCFF020TUP, ENCFF632WLL, ENCFF191WRG, ENCFF776BXS, ENCFF846EJP, ENCFF413JQL, ENCFF428DXE, ENCFF765AOJ, ENCFF781NVO, ENCFF688EKC, ENCFF109TJP, ENCFF830QJK, ENCFF751BKA, ENCFF635AJB, ENCFF725OYPENCBS371DGZ, ENCBS594KNU1, 21Homo sapiensadult58 years/replicates/df7748b8-c933-4c60-a483-37f13dfe4830/, /replicates/790438d6-27c8-4ac9-8168-c9f5704661ff/capped RNA enrichment
ENCSR944DTYENCSR944DTYPRO-capPRO-capcell lineHomo sapiens SEMSEMA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SEM.Haiyuan Yu, CornellENCODEreleasedENCFF076NYH, ENCFF457ZML, ENCFF900YTH, ENCFF680KKZ, ENCFF823CUB, ENCFF509WJK, ENCFF724QYX, ENCFF147SDW, ENCFF605JOB, ENCFF629JKB, ENCFF928RFH, ENCFF842KLO, ENCFF130BML, ENCFF158MYF, ENCFF862NNBENCBS645MJS, ENCBS198VEB1, 21Homo sapienschild5 years/replicates/7360b15d-f522-41a1-8a4e-7254cb8dce3f/, /replicates/5452ae6f-9b3f-4743-ae16-90e38bf19f2c/capped RNA enrichment
ENCSR983JFUENCSR983JFUPRO-capPRO-capcell lineHomo sapiens REH cellREH cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in REH.Haiyuan Yu, CornellENCODEreleasedENCFF313WWB, ENCFF630HJB, ENCFF225HII, ENCFF952XTL, ENCFF134ABY, ENCFF784HSU, ENCFF664OJT, ENCFF238FSZ, ENCFF270RXC, ENCFF734PBI, ENCFF791FYW, ENCFF361BKO, ENCFF626PVW, ENCFF631ESV, ENCFF551FGFENCBS119HVJ, ENCBS326SNQ1, 21Homo sapienschild15 years/replicates/1c1a1abb-c91c-4802-ab7b-cd814167a190/, /replicates/a4cf712d-3751-43c1-b3ab-5eaf6a75e9f1/capped RNA enrichment
ENCSR683YIAENCSR683YIAPRO-capPRO-capcell lineHomo sapiens PfeifferPfeifferA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pfeiffer.Haiyuan Yu, CornellENCODEreleasedENCFF746FFU, ENCFF780HBB, ENCFF823KQG, ENCFF556KRV, ENCFF699HRU, ENCFF669VEQ, ENCFF464JXL, ENCFF596JVT, ENCFF109SQU, ENCFF695YCE, ENCFF237YGT, ENCFF323NOD, ENCFF747UBUENCBS691UNM, ENCBS645QTW1, 21Homo sapiensunknown/replicates/a261eff5-07ed-4a7c-98e0-740ccbd945a8/, /replicates/c765b1ce-884c-48d1-9ce2-cad8067f5c24/capped RNA enrichment
ENCSR526XOQENCSR526XOQPRO-capPRO-capcell lineHomo sapiens NALM6NALM6A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in NALM-6.Haiyuan Yu, CornellENCODEreleasedENCFF903CNV, ENCFF279MFQ, ENCFF434BFV, ENCFF014GTL, ENCFF110OJX, ENCFF464ZML, ENCFF607WXK, ENCFF705OID, ENCFF081SCM, ENCFF027OPK, ENCFF244HXT, ENCFF836BOI, ENCFF172XDH, ENCFF195CRN, ENCFF170ETNENCBS997SHK, ENCBS030MHM1, 21Homo sapiensadult19 years/replicates/b21700bb-f976-4b9e-b000-9771cfd07b66/, /replicates/6f173420-6bd4-4c47-bda7-669d685d5eb1/capped RNA enrichment
ENCSR245UISENCSR245UISPRO-capPRO-capcell lineHomo sapiens Karpas-422Karpas-422A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in KARPAS-422.Haiyuan Yu, CornellENCODEreleasedENCFF295DRD, ENCFF285MVP, ENCFF489OXU, ENCFF091ANQ, ENCFF534QEW, ENCFF579GOH, ENCFF738OWS, ENCFF963TFY, ENCFF790UTG, ENCFF126ZBC, ENCFF154LAF, ENCFF382EUX, ENCFF261DHR, ENCFF429PJV, ENCFF722UJIENCBS291XTK, ENCBS097KLE1, 21Homo sapiensadult72 years/replicates/bcaeb9c9-a143-4493-b099-6dddbc3eb3b2/, /replicates/3d6d791c-0ce0-4689-9c78-e567b10f8fbf/capped RNA enrichment
ENCSR528FMAENCSR528FMAPRO-capPRO-capprimary cellHomo sapiens helper T cellhelper T cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Helper T cells.Haiyuan Yu, CornellENCODEreleasedENCFF635UMN, ENCFF297JKQ, ENCFF529BWC, ENCFF524QKZ, ENCFF042EXG, ENCFF381FQX, ENCFF283SUS, ENCFF248VWF, ENCFF742NXX, ENCFF740MDT, ENCFF165PWR, ENCFF792MQK, ENCFF530RYD, ENCFF648XOT, ENCFF636MOUENCBS440NFK11, 2Homo sapiensunknown/replicates/77d80c5a-fb08-4423-9643-b20da9e7b3f5/, /replicates/e845ac35-d278-48e5-a23d-1bc698854ee4/capped RNA enrichment
ENCSR296XBIENCSR296XBIPRO-capPRO-capprimary cellHomo sapiens T-cellT-cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pan T cells.Haiyuan Yu, CornellENCODEreleasedENCFF198VUP, ENCFF604DLN, ENCFF166QKF, ENCFF494DFF, ENCFF837GZW, ENCFF404DIA, ENCFF673JVH, ENCFF931XON, ENCFF215HTF, ENCFF013SHE, ENCFF974XOG, ENCFF310DAW, ENCFF881LKL, ENCFF376CCD, ENCFF161VCQENCBS363NUK12, 1Homo sapiensunknown/replicates/42e8bfac-3752-4831-b3bd-8195aa108db8/, /replicates/2e5201d2-593a-4000-bb8d-88feff65982e/capped RNA enrichment
ENCSR386UFUENCSR386UFUPRO-capPRO-capprimary cellHomo sapiens peripheral blood mononuclear cellperipheral blood mononuclear cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.Haiyuan Yu, CornellENCODEreleasedENCFF462UFN, ENCFF628IDL, ENCFF518JYV, ENCFF730KUM, ENCFF011WQP, ENCFF168OMN, ENCFF596GEU, ENCFF490HKM, ENCFF098YCV, ENCFF830WCF, ENCFF519CIQ, ENCFF358DIN, ENCFF985LWC, ENCFF652ZFR, ENCFF145YXQ, ENCFF501VTD, ENCFF815QOH, ENCFF433VBLENCBS248HHY12, 1Homo sapiensunknown/replicates/32bc7f81-b148-43d1-84be-e6223dcd86e1/, /replicates/6b03c2fe-3cc8-4f16-ae06-a06bbe594c2a/capped RNA enrichment
ENCSR683YVUENCSR683YVUPRO-capPRO-capprimary cellHomo sapiens helper T cellhelper T cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Helper T cells.Haiyuan Yu, CornellENCODEreleasedENCFF501OMN, ENCFF937IDW, ENCFF946FJQ, ENCFF462RWY, ENCFF818POR, ENCFF222RHE, ENCFF008WPN, ENCFF992XYC, ENCFF198LRK, ENCFF334LNW, ENCFF345VXE, ENCFF149SDN, ENCFF454ZGK, ENCFF436DAJ, ENCFF160QMFENCBS080MOL11, 2Homo sapiensunknown/replicates/747a748c-e76d-4ea4-af46-805dfae2cc6c/, /replicates/ab2c01c9-f0ad-4e25-bfa1-151dc67e9a89/capped RNA enrichment
ENCSR489FZBENCSR489FZBPRO-capPRO-capprimary cellHomo sapiens T-cellT-cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Pan T cells.Haiyuan Yu, CornellENCODEreleasedENCFF169VFI, ENCFF101GNS, ENCFF462ILH, ENCFF064ZYS, ENCFF759GZR, ENCFF687EVW, ENCFF042SSA, ENCFF002VFU, ENCFF678TOK, ENCFF759MHE, ENCFF474OLX, ENCFF718SOM, ENCFF360ZAN, ENCFF858ECA, ENCFF080BBDENCBS041PZF12, 1Homo sapiensunknown/replicates/310e96aa-eaef-4581-b889-7a1e10aa043b/, /replicates/c8aa3fb9-3b75-4244-ade7-3f6ac7d1baa6/capped RNA enrichment
ENCSR723JICENCSR723JICPRO-capPRO-capprimary cellHomo sapiens peripheral blood mononuclear cellperipheral blood mononuclear cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.Haiyuan Yu, CornellENCODEreleasedENCFF324ISK, ENCFF636YLO, ENCFF592LYU, ENCFF421XTW, ENCFF726QSZ, ENCFF284KUE, ENCFF226BWZ, ENCFF047BDT, ENCFF574JPC, ENCFF291LMW, ENCFF708LNZ, ENCFF283MOB, ENCFF725IBR, ENCFF385XLW, ENCFF269LSHENCBS460FKT11, 2Homo sapiensunknown/replicates/f9f5025d-072a-4962-81ea-be301cbf4783/, /replicates/76534209-657f-420f-b86b-712f430d85f7/capped RNA enrichment
ENCSR841GXYENCSR841GXYPRO-capPRO-capprimary cellHomo sapiens monocytemonocyteA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Monocytes.Haiyuan Yu, CornellENCODEreleasedENCFF855TOU, ENCFF733YGT, ENCFF104ISG, ENCFF808ZXD, ENCFF539TFE, ENCFF491ZTP, ENCFF523WDO, ENCFF589BDD, ENCFF364PXT, ENCFF490OXD, ENCFF146FGU, ENCFF942ZKL, ENCFF664QSA, ENCFF219FVU, ENCFF513TWP, ENCFF640WWL, ENCFF392OBQ, ENCFF332TVDENCBS526SHG11, 2Homo sapiensunknown/replicates/f00c770b-2b9f-4d1b-983e-d23c1cf04e23/, /replicates/80c5b9ab-ff3a-4305-b96e-5fbafdac2a12/capped RNA enrichment
ENCSR740DLYENCSR740DLYPRO-capPRO-capprimary cellHomo sapiens peripheral blood mononuclear cellperipheral blood mononuclear cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.Haiyuan Yu, CornellENCODEreleasedENCFF115YTF, ENCFF277ZZN, ENCFF913FFA, ENCFF797HSE, ENCFF359MFL, ENCFF380JCN, ENCFF963SLF, ENCFF184YGZ, ENCFF447QAD, ENCFF187RKR, ENCFF524YRZ, ENCFF255LKE, ENCFF262NUC, ENCFF029KOW, ENCFF998DWH, ENCFF279XAA, ENCFF879HQQ, ENCFF562JWXENCBS777XZX12, 1Homo sapiensunknown/replicates/3f02a0c7-4213-4475-b933-6991cb01da3d/, /replicates/84a7339e-6029-4951-8369-bd56f5810bbd/capped RNA enrichment
ENCSR282IJPENCSR282IJPPRO-capPRO-capprimary cellHomo sapiens neutrophilneutrophilA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Neutrophils.Haiyuan Yu, CornellENCODEreleasedENCFF724AEP, ENCFF750IDW, ENCFF495RWF, ENCFF600MGG, ENCFF697OED, ENCFF110DDP, ENCFF017QOW, ENCFF330IOQ, ENCFF915UZG, ENCFF638DKB, ENCFF070FSW, ENCFF055CSY, ENCFF860BMP, ENCFF600JDB, ENCFF752CNO, ENCFF267WPQ, ENCFF202HXX, ENCFF662RXL, ENCFF045CDF, ENCFF171NUW, ENCFF026GHVENCBS017TTY11, 2Homo sapiensunknown/replicates/cde4dc48-1ce0-4592-b013-61407477db36/, /replicates/c7467cfb-7eed-4bf9-a7ed-7a4f253c774d/capped RNA enrichment
ENCSR712UDAENCSR712UDAPRO-capPRO-capprimary cellHomo sapiens peripheral blood mononuclear cellperipheral blood mononuclear cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.Haiyuan Yu, CornellENCODEreleasedENCFF682XHW, ENCFF373YVU, ENCFF908WAI, ENCFF309AJX, ENCFF618GBF, ENCFF823AUC, ENCFF050VKM, ENCFF697KWI, ENCFF592QTD, ENCFF733TSK, ENCFF819SFE, ENCFF131GUM, ENCFF013WQN, ENCFF981PIT, ENCFF095VFNENCBS488GBD12, 1Homo sapiensunknown/replicates/ca3668f6-9002-444b-9ab2-cd0ee931d737/, /replicates/9fbe3a02-9658-4835-b216-ba5790bac47c/capped RNA enrichment
ENCSR829KWGENCSR829KWGPRO-capPRO-capprimary cellHomo sapiens natural killer cellnatural killer cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in NK cells.Haiyuan Yu, CornellENCODEreleasedENCFF391OHY, ENCFF766IVI, ENCFF716DHF, ENCFF878UUR, ENCFF213FLM, ENCFF945FYM, ENCFF015BWI, ENCFF415KLD, ENCFF325AUT, ENCFF435YKE, ENCFF150ZVK, ENCFF427KWJ, ENCFF718BKN, ENCFF775DNF, ENCFF843WJV, ENCFF201GBY, ENCFF799WER, ENCFF040HTOENCBS568UEB12, 1Homo sapiensunknown/replicates/46e7b029-3966-4c02-86b4-42b6980a8009/, /replicates/59d6e750-7425-416d-9b6b-d0b36670a1ca/capped RNA enrichment
ENCSR382HFHENCSR382HFHPRO-capPRO-capprimary cellHomo sapiens peripheral blood mononuclear cellperipheral blood mononuclear cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.Haiyuan Yu, CornellENCODEreleasedENCFF299YKA, ENCFF186BBC, ENCFF598OCU, ENCFF734CNJ, ENCFF231QJC, ENCFF443PVE, ENCFF204WKJ, ENCFF609AFR, ENCFF391OGH, ENCFF503XOT, ENCFF637QXR, ENCFF942ZED, ENCFF653GEU, ENCFF899CIQ, ENCFF969NXK, ENCFF230VMX, ENCFF021DNZ, ENCFF242XVLENCBS389KNX12, 1Homo sapiensunknown/replicates/70949219-073c-492b-98e6-1570facbea03/, /replicates/c2c9be5b-5603-4f5b-8168-6aa3a1572d05/capped RNA enrichment
ENCSR250REIENCSR250REIPRO-capPRO-capprimary cellHomo sapiens peripheral blood mononuclear cellperipheral blood mononuclear cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.Haiyuan Yu, CornellENCODEreleasedENCFF176KTI, ENCFF006HYH, ENCFF049PKU, ENCFF175LEX, ENCFF216FGM, ENCFF623GTA, ENCFF909UMG, ENCFF462HIZ, ENCFF886XFP, ENCFF232QGY, ENCFF786MWN, ENCFF621BGR, ENCFF262LYL, ENCFF415CTT, ENCFF083WMUENCBS379BLO12, 1Homo sapiensunknown/replicates/75f2e39b-5b8d-4815-96bc-d98090f604d1/, /replicates/05502df0-ef1d-4d2d-8d7b-32a4dff9def8/capped RNA enrichment
ENCSR069DQHENCSR069DQHPRO-capPRO-capprimary cellHomo sapiens cytotoxic T cellcytotoxic T cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in Cytotoxic T cells.Haiyuan Yu, CornellENCODEreleasedENCFF034MUT, ENCFF792ZIA, ENCFF705PSB, ENCFF697XDE, ENCFF005QIT, ENCFF120VEM, ENCFF043RVG, ENCFF112WYT, ENCFF433SXM, ENCFF686BJG, ENCFF399NJN, ENCFF457IUS, ENCFF204DQE, ENCFF164HWA, ENCFF994KOSENCBS901WDC12, 1Homo sapiensunknown/replicates/77608807-c10b-486a-8c7d-b3066920519b/, /replicates/50e2472f-2751-49bc-854b-fbfcb331d056/capped RNA enrichment
ENCSR083AMNENCSR083AMNPRO-capPRO-capprimary cellHomo sapiens B cellB cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in B cells.Haiyuan Yu, CornellENCODEreleasedENCFF010HSV, ENCFF759OKK, ENCFF677NUO, ENCFF567QFJ, ENCFF953ZRW, ENCFF955PYG, ENCFF522WAD, ENCFF843PNA, ENCFF746KYF, ENCFF408NIK, ENCFF812MRP, ENCFF074SSA, ENCFF656RWQ, ENCFF487EJI, ENCFF990HRKENCBS047VKV12, 1Homo sapiensunknown/replicates/e9c157b0-92ed-4aaa-923a-06f52af0d1ed/, /replicates/52702ce7-5fa2-478e-985b-93fa9708ba86/capped RNA enrichment
ENCSR834OVYENCSR834OVYPRO-capPRO-capprimary cellHomo sapiens peripheral blood mononuclear cellperipheral blood mononuclear cellA run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in PBMCs.Haiyuan Yu, CornellENCODEreleasedENCFF831JAH, ENCFF215XDG, ENCFF458HGQ, ENCFF563LWT, ENCFF405QEO, ENCFF378GDW, ENCFF284WAV, ENCFF598FTC, ENCFF957XJW, ENCFF930YXW, ENCFF106HMK, ENCFF928OWF, ENCFF296TBC, ENCFF808BAY, ENCFF990ETZ, ENCFF910BOJ, ENCFF343UPF, ENCFF518SGDENCBS187URZ11, 2Homo sapiensunknown/replicates/08299d8c-5445-45f9-bcf4-68de8bc50b58/, /replicates/486a698c-de23-49be-bbb8-463fbed082ee/capped RNA enrichment