Summary for ENCSR977QPF
Superseded by ENCSR447YYN
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for Lymphoblastoid Cells using donors/samples:GM12878
- Donor diversity
- single
- Assay
- ChIP-seq, RRBS, polyA plus RNA-seq, DNase-seq
- Target
- H3K9ac, H3K79me2, H4K20me1, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, H3K4me2, H2AFZ
- Biosample summary
- Homo sapiens GM12878
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E116
- External resources
- None submitted
Experiments in ENCSR977QPF
Experiments
14 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000AKC | ChIP-seq | H3K27ac | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AKE | ChIP-seq | H3K36me3 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AKF | ChIP-seq | H3K4me1 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AKA | ChIP-seq | H3K4me3 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AKD | ChIP-seq | H3K27me3 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AOX | ChIP-seq | H3K9me3 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AOW | ChIP-seq | H3K79me2 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AKI | ChIP-seq | H4K20me1 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AOV | ChIP-seq | H2AFZ | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AKG | ChIP-seq | H3K4me2 | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000AKH | ChIP-seq | H3K9ac | Homo sapiens GM12878 | Bradley Bernstein, Broad | released | |
| ENCSR000EMT | DNase-seq | Homo sapiens GM12878 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000DFT | RRBS | Homo sapiens GM12878 | Richard Myers, HAIB | released | ||
| ENCSR000COQ | polyA plus RNA-seq | Homo sapiens GM12878 | Thomas Gingeras, CSHL | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AKJ | input library | Homo sapiens GM12878 | Bradley Bernstein, Broad | released |