Summary for ENCSR954HHV
doi:10.17989/ENCSR954HHV
Summary
- Status
- released
- Description
- Reference epigenome for human GM23338-derived bipolar neuron
- Donor diversity
- single
- Assay
- ChIP-seq, polyA plus RNA-seq, RNA-seq, small RNA-seq, microRNA-seq, DNase-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, CTCF
- Biosample summary
- Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days
- Diseases
- Not reported
- Treatments
- doxycycline hyclate
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR954HHV
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR023VVO | polyA plus RNA-seq | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Barbara Wold, Caltech | released | ||
| ENCSR247PYK | ChIP-seq | H3K9me3 | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released | |
| ENCSR301AEA | ChIP-seq | H3K4me1 | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released | |
| ENCSR312RZV | microRNA-seq | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Ali Mortazavi, UCI | released | ||
| ENCSR375IXS | ChIP-seq | H3K36me3 | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released | |
| ENCSR472SEY | ChIP-seq | H3K27me3 | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released | |
| ENCSR603RPC | small RNA-seq | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Thomas Gingeras, CSHL | released | ||
| ENCSR626RVD | DNase-seq | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | John Stamatoyannopoulos, UW | released | ||
| ENCSR849YFO | ChIP-seq | H3K4me3 | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released | |
| ENCSR889GGV | ChIP-seq | POLR2AphosphoS5 | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Richard Myers, HAIB | released | |
| ENCSR905TYC | ChIP-seq | H3K27ac | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released | |
| ENCSR968WKR | RNA-seq | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Thomas Gingeras, CSHL | released | ||
| ENCSR066BZZ | ChIP-seq | CTCF | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR001KCX | input library | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Bradley Bernstein, Broad | released | |
| ENCSR170WVI | input library | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Richard Myers, HAIB | released | |
| ENCSR138PGW | input library | Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days | Richard Myers, HAIB | released |