Summary for ENCSR938GXK

doi:10.17989/ENCSR938GXK

Summary

Status: released
Description: REMC Epigenome (Class 1) for H1 Cells using donors/samples:56; 68; 69; 27276; 27277; 35081; 35082; 35083; CDI-01; H1-02; H1-04; H1-05; H1-06; H1-07; H1-09; H1-10; H1-12; H1-13; hESC-01; HS0995; HS0998-1; HS1032-1; HS1345-1; HS1346-1; HS1347-1
Donor diversity: single
Assay: ChIP-seq, polyA plus RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq, MRE-seq, MeDIP-seq, RRBS
Target: H2BK15ac, H3K9ac, H4K91ac, H3K79me2, H3K27ac, H3K4me2, H4K5ac, H2AFZ, H2BK120ac, H3K79me1, H3K23me2, H3K4ac, H2BK12ac, H4K20me1, H2AK5ac, H3K9me3, H3K23ac, H4K8ac, H3K36me3, H3K27me3, H3K18ac, H2BK20ac, H3K56ac, H2BK5ac, H3K4me1, H3K4me3, H3K14ac, Methylcytidine
Biosample summary: Homo sapiens H1
Diseases: Not reported

Attribution

Lab: Anshul Kundaje, Stanford
Award: U01DA025956 (Roadmap Epigenomics, Baylor)
Project: Roadmap
Aliases: roadmap-epigenomics:E003
External resources: IHEC:IHECRE00001050

Experiments

58 experiments

Accession	Assay	Target	Biosample summary	Lab	Status
ENCSR122SIM	microRNA-seq		Homo sapiens H1	Bing Ren, UCSD	released
ENCSR728SZE	ChIP-seq	H4K20me1	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR867ITK	MRE-seq		Homo sapiens H1	Joseph Costello, UCSF	archived
ENCSR161NON	ChIP-seq	H2BK5ac	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR794OFW	DNase-seq		Homo sapiens H1	John Stamatoyannopoulos, UW	archived
ENCSR130EML	ChIP-seq	H3K4ac	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR038PFD	ChIP-seq	H3K18ac	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR642BMG	microRNA-seq		Homo sapiens H1	Joseph Costello, UCSF	released
ENCSR670WQY	polyA plus RNA-seq		Homo sapiens H1	Joe Ecker, Salk	released
ENCSR395USV	ChIP-seq	H3K9me3	Homo sapiens H1	Joseph Costello, UCSF	released
ENCSR216OGD	ChIP-seq	H3K27me3	Homo sapiens H1	Bradley Bernstein, Broad	released
ENCSR019SQX	ChIP-seq	H3K4me3	Homo sapiens H1	Bradley Bernstein, Broad	released
ENCSR443YAS	ChIP-seq	H3K4me3	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR451WML	RRBS		Homo sapiens H1	Bradley Bernstein, Broad	archived
ENCSR687FDK	ChIP-seq	H3K27me3	Homo sapiens H1	Joseph Costello, UCSF	released
ENCSR322MEI	ChIP-seq	H3K4me2	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR891KGZ	ChIP-seq	H4K8ac	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR043RSE	polyA plus RNA-seq		Homo sapiens H1	Joe Ecker, Salk	released
ENCSR441UHO	ChIP-seq	H3K9ac	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR271TFS	ChIP-seq	H3K4me1	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR952GVX	ChIP-seq	H3K9ac	Homo sapiens H1	Bradley Bernstein, Broad	released
ENCSR482VHG	whole-genome shotgun bisulfite sequencing		Homo sapiens H1	Joe Ecker, Salk	released
ENCSR639BMP	ChIP-seq		Homo sapiens H1	Bradley Bernstein, Broad	released
ENCSR009MSL	ChIP-seq	H3K36me3	Homo sapiens H1	Bing Ren, UCSD	archived
ENCSR186OBR	ChIP-seq	H3K27me3	Homo sapiens H1	Bing Ren, UCSD	released

Control experiments

9 control experiments

Accession	Control type	Biosample summary	Lab	Status
ENCSR131IUA	input library	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR697DAD	input library	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR814EAU	input library	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR985CHJ	input library	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR543PVV	input library	Homo sapiens H1	Joseph Costello, UCSF	released
ENCSR407ZAC	input library	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR569NEE	input library	Homo sapiens H1	Bing Ren, UCSD	released
ENCSR604KTL	input library	Homo sapiens H1	Bradley Bernstein, Broad	archived
ENCSR170FFQ	input library	Homo sapiens H1	Bing Ren, UCSD	released

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Summary for ENCSR938GXK

Summary

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Experiments in ENCSR938GXK

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