Summary for ENCSR909IQE

doi:10.17989/ENCSR909IQE

Summary

Status
released
Description
Reference epigenome for mouse midbrain (13.5 day embryonic)
Donor diversity
single
Assay
whole-genome shotgun bisulfite sequencing, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
Target
H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
Biosample summary
Mus musculus strain B6NCrl midbrain tissue embryo (13.5 days)
Diseases
Not reported

Attribution

ENCODE3 project
Lab
ENCODE Consortium
Award
U41HG006992 (J. Michael Cherry, Stanford)
Project
ENCODE
External resources

Experiments in ENCSR909IQE

Experiments
12 experiments
Accession
Assay
Target
Biosample summary
Lab
Status
Cart
ENCSR819QOJATAC-seqMus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR952CMNwhole-genome shotgun bisulfite sequencingMus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Joe Ecker, Salk
released
ENCSR754AXUChIP-seqH3K9me3Mus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR792RJVpolyA plus RNA-seqMus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Barbara Wold, Caltech
released
ENCSR066WUDChIP-seqH3K36me3Mus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR129OJNChIP-seqH3K27me3Mus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR167ZGVChIP-seqH3K4me3Mus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR253IEGChIP-seqH3K4me1Mus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR671NSSChIP-seqH3K27acMus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR680TRJmicroRNA-seqMus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Ali Mortazavi, UCI
released
ENCSR286OKNChIP-seqH3K9acMus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
ENCSR706PSQChIP-seqH3K4me2Mus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released
Control experiments
1 control experiment
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR359ETUinput libraryMus musculus strain B6NCrl midbrain tissue embryo (13.5 days)Bing Ren, UCSD
released