Summary for ENCSR880UFN

doi:10.17989/ENCSR880UFN

Summary

Status
released
Description
REMC Epigenome (Class 1) for H1 Derived Mesendoderm Cultured Cells using donors/samples:BMP4-03; BMP4-04; BMP4-07; BMP4-08
Donor diversity
single
Assay
ChIP-seq, polyA plus RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq
Target
H2BK15ac, H3K4ac, H3K9ac, H3K79me2, H2AK5ac, H3K4me1, H3K27ac, H4K8ac, H3K36me3, H3K27me3, H3K9me3, H3K18ac, H3K4me3, H3K4me2, H3K23ac, H2BK120ac, H2BK5ac, H3K79me1
Biosample summary
Homo sapiens mesendoderm originated from H1
Diseases
Not reported

Attribution

Roadmap Epigenomics Mapping Consortium
Lab
Anshul Kundaje, Stanford
Award
U01DA025956 (Roadmap Epigenomics, Baylor)
Project
Roadmap
Aliases
roadmap-epigenomics:E004
External resources
Tags
Search for all ReferenceEpigenome with internal tag ccre_inputv1

Experiments in ENCSR880UFN

Experiments
24 experiments
Accession
Assay
Target
Biosample summary
Lab
Status
Cart
ENCSR664KWYChIP-seqH3K4me1Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR785CATChIP-seqH3K27me3Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
archived
ENCSR900EUTChIP-seqH2BK120acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR575ZNEChIP-seqH3K79me2Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR976JGIpolyA plus RNA-seqHomo sapiens mesendoderm originated from H1Joe Ecker, Salk
released
ENCSR814MAFChIP-seqH3K4acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR915PDGChIP-seqH3K27acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
archived
ENCSR565XTTChIP-seqH3K18acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR473AQIChIP-seqH3K23acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR357HANChIP-seqH3K79me1Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR598UDUChIP-seqH2AK5acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR441SATChIP-seqH3K4me3Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR714DIFDNase-seqHomo sapiens mesendoderm originated from H1John Stamatoyannopoulos, UW
released
ENCSR473PNTChIP-seqH3K27acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR255DLPwhole-genome shotgun bisulfite sequencingHomo sapiens mesendoderm originated from H1Joe Ecker, Salk
released
ENCSR327JOJChIP-seqH2BK5acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR700BEWpolyA plus RNA-seqHomo sapiens mesendoderm originated from H1Joe Ecker, Salk
released
ENCSR405AXOChIP-seqH3K27me3Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR721MPVChIP-seqH4K8acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR839PUYChIP-seqH3K9acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR126BGUChIP-seqH3K4me2Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR494ATAsmall RNA-seqHomo sapiens mesendoderm originated from H1Joe Ecker, Salk
released
ENCSR297AUZChIP-seqH2BK15acHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR144RXLChIP-seqH3K36me3Homo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
Control experiments
3 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR080WMIinput libraryHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR960RHKinput libraryHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released
ENCSR810RRRinput libraryHomo sapiens mesendoderm originated from H1Bing Ren, UCSD
released