Summary for ENCSR867OGI

doi:10.17989/ENCSR867OGI

Summary

Status
released
Description
Reference epigenome for human upper lobe of left lung (37 year old male)
Donor diversity
single
Assay
ChIP-seq, RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq
Target
H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, EP300, H3K4me3, POLR2A, CTCF
Biosample summary
Homo sapiens upper lobe of left lung tissue male adult (37 years)
Diseases
Not reported

Attribution

ENCODE3 project
Lab
ENCODE Consortium
Award
U41HG006992 (J. Michael Cherry, Stanford)
Project
ENCODE
External resources

Experiments in ENCSR867OGI

Experiments
13 experiments
Accession
Assay
Target
Biosample summary
Lab
Status
Cart
ENCSR027FSZChIP-seqCTCFHomo sapiens upper lobe of left lung tissue male adult (37 years)Michael Snyder, Stanford
released
ENCSR074WIBChIP-seqH3K4me3Homo sapiens upper lobe of left lung tissue male adult (37 years)Bradley Bernstein, Broad
released
ENCSR224CTRwhole-genome shotgun bisulfite sequencingHomo sapiens upper lobe of left lung tissue male adult (37 years)Richard Myers, HAIB
released
ENCSR276OPIChIP-seqH3K36me3Homo sapiens upper lobe of left lung tissue male adult (37 years)Bradley Bernstein, Broad
released
ENCSR313CODRNA-seqHomo sapiens upper lobe of left lung tissue male adult (37 years)Thomas Gingeras, CSHL
released
ENCSR469YCEChIP-seqH3K27me3Homo sapiens upper lobe of left lung tissue male adult (37 years)Bradley Bernstein, Broad
released
ENCSR505YFAChIP-seqH3K27acHomo sapiens upper lobe of left lung tissue male adult (37 years)Bradley Bernstein, Broad
released
ENCSR539RDFsmall RNA-seqHomo sapiens upper lobe of left lung tissue male adult (37 years)Thomas Gingeras, CSHL
released
ENCSR595MTVChIP-seqH3K4me1Homo sapiens upper lobe of left lung tissue male adult (37 years)Bradley Bernstein, Broad
released
ENCSR674IEIChIP-seqPOLR2AHomo sapiens upper lobe of left lung tissue male adult (37 years)Michael Snyder, Stanford
released
ENCSR714FDJChIP-seqH3K9me3Homo sapiens upper lobe of left lung tissue male adult (37 years)Bradley Bernstein, Broad
released
ENCSR828PZHChIP-seqEP300Homo sapiens upper lobe of left lung tissue male adult (37 years)Richard Myers, HAIB
released
ENCSR058VBMDNase-seqHomo sapiens upper lobe of left lung tissue male adult (37 years)John Stamatoyannopoulos, UW
released
Control experiments
3 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR062MVCinput libraryHomo sapiens upper lobe of left lung tissue male adult (37 years)Michael Snyder, Stanford
released
ENCSR746QZLinput libraryHomo sapiens upper lobe of left lung tissue male adult (37 years)Bradley Bernstein, Broad
released
ENCSR976HZMinput libraryHomo sapiens upper lobe of left lung tissue male adult (37 years)Richard Myers, HAIB
released