Summary for ENCSR867OGI
doi:10.17989/ENCSR867OGI
Summary
- Status
- released
- Description
- Reference epigenome for human upper lobe of left lung (37 year old male)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, EP300, H3K4me3, POLR2A, CTCF
- Biosample summary
- Homo sapiens upper lobe of left lung tissue male adult (37 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR867OGI
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|
ENCSR027FSZ | ChIP-seq | CTCF | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Michael Snyder, Stanford | released | |
ENCSR074WIB | ChIP-seq | H3K4me3 | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR224CTR | whole-genome shotgun bisulfite sequencing | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Richard Myers, HAIB | released | ||
ENCSR276OPI | ChIP-seq | H3K36me3 | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR313COD | RNA-seq | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
ENCSR469YCE | ChIP-seq | H3K27me3 | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR505YFA | ChIP-seq | H3K27ac | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR539RDF | small RNA-seq | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
ENCSR595MTV | ChIP-seq | H3K4me1 | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR674IEI | ChIP-seq | POLR2A | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Michael Snyder, Stanford | released | |
ENCSR714FDJ | ChIP-seq | H3K9me3 | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR828PZH | ChIP-seq | EP300 | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Richard Myers, HAIB | released | |
ENCSR058VBM | DNase-seq | Homo sapiens upper lobe of left lung tissue male adult (37 years) | John Stamatoyannopoulos, UW | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR062MVC | input library | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Michael Snyder, Stanford | released | |
ENCSR746QZL | input library | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR976HZM | input library | Homo sapiens upper lobe of left lung tissue male adult (37 years) | Richard Myers, HAIB | released |