Summary for ENCSR840QYF
doi:10.17989/ENCSR840QYF
Summary
- Status
- released
- Description
- Reference epigenome for human stomach (37 year old male)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, DNase-seq, small RNA-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens stomach tissue male adult (37 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR840QYF
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR033FDW | ChIP-seq | POLR2AphosphoS5 | Homo sapiens stomach tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR227DGG | ChIP-seq | H3K27me3 | Homo sapiens stomach tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR418FVT | small RNA-seq | Homo sapiens stomach tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR471RUK | RNA-seq | Homo sapiens stomach tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR493MQY | ChIP-seq | H3K4me1 | Homo sapiens stomach tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR503XFW | ChIP-seq | H3K9me3 | Homo sapiens stomach tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR552ICY | ChIP-seq | H3K36me3 | Homo sapiens stomach tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR618QYE | ChIP-seq | CTCF | Homo sapiens stomach tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR775VUA | ChIP-seq | POLR2A | Homo sapiens stomach tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR843UEZ | ChIP-seq | H3K4me3 | Homo sapiens stomach tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR944KAZ | ChIP-seq | H3K27ac | Homo sapiens stomach tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR177NIJ | DNase-seq | Homo sapiens stomach tissue male adult (37 years) | John Stamatoyannopoulos, UW | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR890ONE | input library | Homo sapiens stomach tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR538MSN | input library | Homo sapiens stomach tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR394BOP | input library | Homo sapiens stomach tissue male adult (37 years) | Michael Snyder, Stanford | released |