Summary for ENCSR835OVT
doi:10.17989/ENCSR835OVT
Summary
- Status
- released
- Description
- Reference Epigenome for mouse CH12.LX cell line
- Donor diversity
- single
- Assay
- RNA-seq, DNase-seq, ChIP-seq, polyA plus RNA-seq
- Target
- POLR2A, H3K36me3, H3K4me3, CTCF, H3K27ac, H3K9ac, EP300, H3K27me3, H3K9me3, H3K4me1, H3K4me2
- Biosample summary
- Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR835OVT
Experiments
14 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000DHY | ChIP-seq | H3K27me3 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Ross Hardison, PennState | released | |
| ENCSR000DHO | ChIP-seq | H3K9me3 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Ross Hardison, PennState | released | |
| ENCSR000AJV | RNA-seq | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Thomas Gingeras, CSHL | released | ||
| ENCSR000ERM | ChIP-seq | CTCF | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Michael Snyder, Stanford | released | |
| ENCSR000ERQ | ChIP-seq | POLR2A | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Michael Snyder, Stanford | released | |
| ENCSR000ERI | ChIP-seq | EP300 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Michael Snyder, Stanford | released | |
| ENCSR000CGK | ChIP-seq | H3K4me3 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Bing Ren, UCSD | released | |
| ENCSR000CFL | ChIP-seq | H3K36me3 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Bing Ren, UCSD | released | |
| ENCSR000CGH | ChIP-seq | H3K4me1 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Bing Ren, UCSD | released | |
| ENCSR000CGJ | ChIP-seq | H3K27ac | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Bing Ren, UCSD | released | |
| ENCSR000CGI | ChIP-seq | H3K4me2 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Bing Ren, UCSD | released | |
| ENCSR000CGL | ChIP-seq | H3K9ac | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Bing Ren, UCSD | released | |
| ENCSR000CMQ | DNase-seq | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | John Stamatoyannopoulos, UW | released | ||
| ENCSR000CHR | polyA plus RNA-seq | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Ross Hardison, PennState | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000DIT | input library | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Ross Hardison, PennState | released | |
| ENCSR000ERS | IgG | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Michael Snyder, Stanford | released | |
| ENCSR000ERT | IgG | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Michael Snyder, Stanford | released | |
| ENCSR000CGG | input library | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX | Bing Ren, UCSD | released |