Summary for ENCSR816KBS
doi:10.17989/ENCSR816KBS
Summary
- Status
- released
- Description
- Reference epigenome for human sigmoid colon (37 year old male)
- Donor diversity
- single
- Assay
- RNA-seq, small RNA-seq, ChIP-seq, ATAC-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, EP300, POLR2AphosphoS5, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens sigmoid colon tissue male adult (37 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR816KBS
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR043RXI | ChIP-seq | H3K36me3 | Homo sapiens sigmoid colon tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR181HTE | ChIP-seq | H3K4me1 | Homo sapiens sigmoid colon tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR431EHE | ChIP-seq | POLR2A | Homo sapiens sigmoid colon tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR548QCP | ATAC-seq | Homo sapiens sigmoid colon tissue male adult (37 years) | Michael Snyder, Stanford | released | ||
| ENCSR654KVJ | ChIP-seq | H3K9me3 | Homo sapiens sigmoid colon tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR721AHD | ChIP-seq | CTCF | Homo sapiens sigmoid colon tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR734ZTQ | ChIP-seq | H3K27me3 | Homo sapiens sigmoid colon tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR807XUB | ChIP-seq | H3K27ac | Homo sapiens sigmoid colon tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR857WJK | RNA-seq | Homo sapiens sigmoid colon tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR880LXP | small RNA-seq | Homo sapiens sigmoid colon tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR906UPC | ChIP-seq | EP300 | Homo sapiens sigmoid colon tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR920FID | ChIP-seq | POLR2AphosphoS5 | Homo sapiens sigmoid colon tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR960AAL | ChIP-seq | H3K4me3 | Homo sapiens sigmoid colon tissue male adult (37 years) | Bradley Bernstein, Broad | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR099RQB | input library | Homo sapiens sigmoid colon tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR983XKG | input library | Homo sapiens sigmoid colon tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR185GDB | input library | Homo sapiens sigmoid colon tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR100FGR | input library | Homo sapiens sigmoid colon tissue male adult (37 years) | Richard Myers, HAIB | released |