Summary for ENCSR743BGS
doi:10.17989/ENCSR743BGS
Summary
- Status
- released
- Description
- Reference epigenome for human PC-3 cell line
- Donor diversity
- single
- Assay
- DNase-seq, ATAC-seq, ChIP-seq, RNA-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens PC-3
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR743BGS
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|
ENCSR359LOD | ChIP-seq | CTCF | Homo sapiens PC-3 | Bradley Bernstein, Broad | released | |
ENCSR052AWE | DNase-seq | Homo sapiens PC-3 | John Stamatoyannopoulos, UW | released | ||
ENCSR420NLC | RNA-seq | Homo sapiens PC-3 | Thomas Gingeras, CSHL | released | ||
ENCSR566UMF | ChIP-seq | H3K4me1 | Homo sapiens PC-3 | Bradley Bernstein, Broad | released | |
ENCSR275NCH | ChIP-seq | H3K4me3 | Homo sapiens PC-3 | Bradley Bernstein, Broad | released | |
ENCSR849APH | ChIP-seq | H3K36me3 | Homo sapiens PC-3 | Bradley Bernstein, Broad | released | |
ENCSR826UTD | ChIP-seq | H3K27ac | Homo sapiens PC-3 | Bradley Bernstein, Broad | released | |
ENCSR881TWJ | ChIP-seq | H3K27me3 | Homo sapiens PC-3 | Bradley Bernstein, Broad | released | |
ENCSR339ZMJ | ChIP-seq | H3K9me3 | Homo sapiens PC-3 | Bradley Bernstein, Broad | released | |
ENCSR387TQN | microRNA-seq | Homo sapiens PC-3 | Ali Mortazavi, UCI | released | ||
ENCSR499ASS | ATAC-seq | Homo sapiens PC-3 | Michael Snyder, Stanford | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR328AHC | input library | Homo sapiens PC-3 | Bradley Bernstein, Broad | released |