Summary for ENCSR705YBY
doi:10.17989/ENCSR705YBY
Summary
- Status
- released
- Description
- Reference epigenome for mouse limb (14.5 day embryonic)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, POLR2A, H3K4me3, H3K27ac, H3K9ac, H3K9me3, H3K27me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl limb tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR705YBY
Experiments
14 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|---|
ENCSR460BUL | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | ||
ENCSR000CEC | ChIP-seq | POLR2A | ENCDO956IXV | Mus musculus strain B6NCrl limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR529ERN | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR871CGP | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR333QJO | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR765SJF | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR099RYD | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Joe Ecker, Salk | released | ||
ENCSR274ACJ | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR636NXY | DNase-seq | ENCDO956IXV | Mus musculus strain B6NCrl limb tissue embryo (14.5 days) | John Stamatoyannopoulos, UW | released | ||
ENCSR176BXC | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR631QAE | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR021ALF | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR216NEG | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl limb tissue embryo (14.5 days) | Barbara Wold, Caltech | released | ||
ENCSR669XBU | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl limb tissue embryo (14.5 days) | Ali Mortazavi, UCI | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR000CCP | input library | Mus musculus strain B6NCrl limb tissue embryo (14.5 days) | Bing Ren, UCSD | archived | |
ENCSR232EOO | input library | Mus musculus strain B6NTac;B6NCrl/Lap limb tissue embryo (14.5 days) | Bing Ren, UCSD | released |