Summary for ENCSR649KUM

doi:10.17989/ENCSR649KUM

Summary

Status
released
Description
Reference epigenome for mouse midbrain (14.5 day embryonic)
Donor diversity
composite
Assay
whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
Target
H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
Biosample summary
B6NCrl midbrain tissue
Diseases
Not reported

Attribution

ENCODE3 project
Lab
ENCODE Consortium
Award
U41HG006992 (J. Michael Cherry, Stanford)
Project
ENCODE
External resources

Experiments in ENCSR649KUM

Experiments
13 experiments
Accession
Assay
Target
Donors
Biosample summary
Lab
Status
Cart
ENCSR384JBFATAC-seqENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR344GSMwhole-genome shotgun bisulfite sequencingENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Joe Ecker, Salk
released
ENCSR702JYVChIP-seqH3K36me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR948VPVChIP-seqH3K9me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR037HLBChIP-seqH3K4me1ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR929GXPChIP-seqH3K27me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR203KIBChIP-seqH3K4me3ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR254AHAChIP-seqH3K27acENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR067FKPChIP-seqH3K9acENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR755SGKChIP-seqH3K4me2ENCDO469XMJMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released
ENCSR367FCWDNase-seqENCDO956IXVMus musculus strain B6NCrl midbrain tissue embryo (14.5 days)John Stamatoyannopoulos, UW
released
ENCSR863FYWmicroRNA-seqENCDO956IXVMus musculus strain B6NCrl midbrain tissue embryo (14.5 days)Ali Mortazavi, UCI
released
ENCSR343YLBpolyA plus RNA-seqENCDO956IXVMus musculus strain B6NCrl midbrain tissue embryo (14.5 days)Barbara Wold, Caltech
released
Control experiments
1 control experiment
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR413VHHinput libraryMus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)Bing Ren, UCSD
released