Summary for ENCSR649KUM
doi:10.17989/ENCSR649KUM
Summary
- Status
- released
- Description
- Reference epigenome for mouse midbrain (14.5 day embryonic)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl midbrain tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR649KUM
Experiments
13 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|---|
ENCSR384JBF | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | ||
ENCSR344GSM | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Joe Ecker, Salk | released | ||
ENCSR702JYV | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR948VPV | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR037HLB | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR929GXP | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR203KIB | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR254AHA | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR067FKP | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR755SGK | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
ENCSR367FCW | DNase-seq | ENCDO956IXV | Mus musculus strain B6NCrl midbrain tissue embryo (14.5 days) | John Stamatoyannopoulos, UW | released | ||
ENCSR863FYW | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl midbrain tissue embryo (14.5 days) | Ali Mortazavi, UCI | released | ||
ENCSR343YLB | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl midbrain tissue embryo (14.5 days) | Barbara Wold, Caltech | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR413VHH | input library | Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days) | Bing Ren, UCSD | released |