Summary for ENCSR646GBV
doi:10.17989/ENCSR646GBV
Summary
- Status
- released
- Description
- Reference epigenome for human thyroid gland (51 year old female)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3, POLR2A, CTCF
- Biosample summary
- Homo sapiens thyroid gland tissue female adult (51 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR646GBV
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR201FIW | ATAC-seq | Homo sapiens thyroid gland tissue female adult (51 years) | Michael Snyder, Stanford | released | ||
| ENCSR309UVT | ChIP-seq | H3K4me3 | Homo sapiens thyroid gland tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR432GAO | ChIP-seq | POLR2A | Homo sapiens thyroid gland tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR497OVD | ChIP-seq | H3K4me1 | Homo sapiens thyroid gland tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR500YBS | ChIP-seq | H3K27ac | Homo sapiens thyroid gland tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR558AXI | ChIP-seq | H3K9me3 | Homo sapiens thyroid gland tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR586DVD | ChIP-seq | H3K27me3 | Homo sapiens thyroid gland tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR601MHU | whole-genome shotgun bisulfite sequencing | Homo sapiens thyroid gland tissue female adult (51 years) | Richard Myers, HAIB | released | ||
| ENCSR687HJY | RNA-seq | Homo sapiens thyroid gland tissue female adult (51 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR942UIL | ChIP-seq | H3K36me3 | Homo sapiens thyroid gland tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR955BIB | ChIP-seq | CTCF | Homo sapiens thyroid gland tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR450PWF | DNase-seq | Homo sapiens thyroid gland tissue female adult (51 years) | John Stamatoyannopoulos, UW | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR347VUG | input library | Homo sapiens thyroid gland tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR088BOY | input library | Homo sapiens thyroid gland tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR144QLB | input library | Homo sapiens thyroid gland tissue female adult (51 years) | Michael Snyder, Stanford | released |