Summary for ENCSR628CIH
Superseded by ENCSR193SZM
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for Epidermal Keratinocyte Primary Cells using donors/samples:NHEK
- Donor diversity
- composite
- Assay
- ChIP-seq, polyA plus RNA-seq, DNase-seq
- Target
- H3K9ac, H3K79me2, H4K20me1, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, H3K9me1, H3K4me2, H2AFZ
- Biosample summary
- keratinocyte primary cell
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E127
- External resources
- None submitted
Experiments in ENCSR628CIH
Experiments
14 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR000ALK | ChIP-seq | H3K27ac | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALM | ChIP-seq | H3K36me3 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALO | ChIP-seq | H3K4me3 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALI | ChIP-seq | H3K4me1 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALL | ChIP-seq | H3K27me3 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ARN | ChIP-seq | H3K9me3 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000CPL | polyA plus RNA-seq | ENCDO268AAA | Homo sapiens keratinocyte female | Thomas Gingeras, CSHL | released | ||
| ENCSR000EPQ | DNase-seq | ENCDO268AAA | Homo sapiens keratinocyte female | John Stamatoyannopoulos, UW | released | ||
| ENCSR000ARL | ChIP-seq | H2AFZ | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALQ | ChIP-seq | H3K9me1 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ARM | ChIP-seq | H3K79me2 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALP | ChIP-seq | H3K9ac | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALR | ChIP-seq | H4K20me1 | ENCDO268AAA | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALN | ChIP-seq | H3K4me2 | ENCDO303AAA | Homo sapiens keratinocyte male | Bradley Bernstein, Broad | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000ALS | input library | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released |