Summary for ENCSR571BOJ
doi:10.17989/ENCSR571BOJ
Summary
- Status
- released
- Description
- Reference epigenome for mouse stomach (0 day postnatal)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, CTCF, H3K27ac, H3K9ac, EP300, H3K9me3, H3K27me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl stomach tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR571BOJ
Experiments
15 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|---|
ENCSR597BGP | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | ||
ENCSR104QEN | ChIP-seq | CTCF | ENCDO956IXV | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | Richard Myers, HAIB | released | |
ENCSR450KVW | ChIP-seq | EP300 | ENCDO956IXV | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | Richard Myers, HAIB | released | |
ENCSR516KLO | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR346FJG | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR969CPK | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR940CMI | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR916CBN | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR286OOJ | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Joe Ecker, Salk | released | ||
ENCSR556DLJ | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR288LNF | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR048IZJ | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released | |
ENCSR538NTY | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | Ali Mortazavi, UCI | released | ||
ENCSR178GUS | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | Barbara Wold, Caltech | released | ||
ENCSR969OPE | DNase-seq | ENCDO956IXV | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | John Stamatoyannopoulos, UW | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR389SQZ | input library | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | Richard Myers, HAIB | released | |
ENCSR993MMD | input library | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | Richard Myers, HAIB | released | |
ENCSR281FZS | input library | Mus musculus strain B6NCrl stomach tissue postnatal (0 days) | Richard Myers, HAIB | released | |
ENCSR050VUZ | input library | Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue postnatal (0 days) | Bing Ren, UCSD | released |