Summary for ENCSR553AAA
doi:10.17989/ENCSR553AAA
Summary
- Status
- released
- Description
- Reference epigenome for mouse midbrain (12.5 day embryonic)
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
- Biosample summary
- Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR553AAA
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR154BXN | ATAC-seq | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | ||
| ENCSR591SJC | microRNA-seq | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Ali Mortazavi, UCI | released | ||
| ENCSR104PWP | ChIP-seq | H3K27me3 | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR765UOU | ChIP-seq | H3K9me3 | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR252ONR | ChIP-seq | H3K27ac | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR554TSO | ChIP-seq | H3K4me3 | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR157IVC | ChIP-seq | H3K4me1 | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR764UIE | ChIP-seq | H3K36me3 | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR707DZS | ChIP-seq | H3K4me2 | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR312BOK | ChIP-seq | H3K9ac | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released | |
| ENCSR634OPL | whole-genome shotgun bisulfite sequencing | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Joe Ecker, Salk | released | ||
| ENCSR908JWT | polyA plus RNA-seq | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Barbara Wold, Caltech | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR415FCU | input library | Mus musculus strain B6NCrl midbrain tissue embryo (12.5 days) | Bing Ren, UCSD | released |