Summary for ENCSR539JGB

doi:10.17989/ENCSR539JGB

Summary

Status: released
Description: REMC Epigenome (Class 1) for H1 Derived Neuronal Progenitor Cultured Cells using donors/samples:NPC-03;NPC-04;NPC-05;NPC-06
Donor diversity: single
Assay: ChIP-seq, polyA plus RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq
Target: H2BK15ac, H3K9ac, H4K91ac, H3K27ac, H3K4me2, H2BK120ac, H3K79me1, H3K4ac, H2BK12ac, H2AK5ac, H3K9me3, H3K23ac, H4K8ac, H3K36me3, H3K27me3, H3K18ac, H2BK5ac, H3K4me1, H3K4me3, H3K14ac
Biosample summary: Homo sapiens neuronal stem cell originated from H1
Diseases: Not reported

Attribution

Lab: Anshul Kundaje, Stanford
Award: U01DA025956 (Roadmap Epigenomics, Baylor)
Project: Roadmap
Aliases: roadmap-epigenomics:E007
External resources: IHEC:IHECRE00000992
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Experiments

31 experiments

Accession	Assay	Target	Biosample summary	Lab	Status
ENCSR940RIU	ChIP-seq	H2BK12ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR391WDE	ChIP-seq	H3K9me3	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR874JLQ	ChIP-seq	H3K36me3	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	archived
ENCSR260CXF	ChIP-seq	H4K91ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR331CCW	ChIP-seq	H3K27ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	archived
ENCSR626UPW	ChIP-seq	H3K9ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR277JAU	ChIP-seq	H4K8ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR506LVE	ChIP-seq	H3K4me1	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	archived
ENCSR852DMC	ChIP-seq	H3K27ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	archived
ENCSR361LIU	ChIP-seq	H3K23ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR799SRL	ChIP-seq	H3K27ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR570POG	ChIP-seq	H3K79me1	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR977XUX	polyA plus RNA-seq		Homo sapiens neuronal stem cell originated from H1	Joe Ecker, Salk	released
ENCSR572EET	polyA plus RNA-seq		Homo sapiens neuronal stem cell originated from H1	Joe Ecker, Salk	released
ENCSR651SVZ	ChIP-seq	H2BK5ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR540ONK	whole-genome shotgun bisulfite sequencing		Homo sapiens neuronal stem cell originated from H1	Joe Ecker, Salk	released
ENCSR486GWT	ChIP-seq	H3K4me2	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR278FVO	DNase-seq		Homo sapiens neuronal stem cell originated from H1	John Stamatoyannopoulos, UW	released
ENCSR256ESY	ChIP-seq	H3K36me3	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR811NNT	ChIP-seq	H2BK120ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR687EBF	ChIP-seq	H3K14ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR956CTX	ChIP-seq	H3K4me3	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR291IZK	small RNA-seq		Homo sapiens neuronal stem cell originated from H1	Joe Ecker, Salk	released
ENCSR692CTK	ChIP-seq	H3K27me3	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR123JZO	ChIP-seq	H2BK15ac	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released

Control experiments

4 control experiments

Accession	Control type	Biosample summary	Lab	Status
ENCSR300BKE	input library	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR339WBT	input library	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR064SPB	input library	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released
ENCSR645QVG	input library	Homo sapiens neuronal stem cell originated from H1	Bing Ren, UCSD	released

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Summary for ENCSR539JGB

Summary

Attribution

Experiments in ENCSR539JGB

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