Summary for ENCSR537GED
doi:10.17989/ENCSR537GED
Supersedes ENCSR177CZE
Summary
- Status
- released
- Description
- Reference epigenome for human fibroblast of lung
- Donor diversity
- composite
- Assay
- RNA-seq, DNase-seq, ChIP-seq, polyA plus RNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, CTCF, H3K9me3, H3K4me3
- Biosample summary
- fibroblast of lung primary cell
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR537GED
Experiments
10 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR000AAO | RNA-seq | ENCDO045AAA, ENCDO044AAA | Homo sapiens fibroblast of lung female adult (83 years) and male adult (23 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR000AMR | ChIP-seq | H3K27ac | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMS | ChIP-seq | H3K27me3 | ENCDO156MSV, ENCDO269AAA | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMT | ChIP-seq | H3K36me3 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMU | ChIP-seq | H3K4me1 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ARQ | ChIP-seq | H3K9me3 | ENCDO156MSV, ENCDO269AAA | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000CPM | polyA plus RNA-seq | ENCDO269AAA | Homo sapiens fibroblast of lung male adult (45 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR000DVA | ChIP-seq | CTCF | ENCDO333AAA | Homo sapiens fibroblast of lung | John Stamatoyannopoulos, UW | released | |
| ENCSR000DWZ | ChIP-seq | H3K4me3 | ENCDO269AAA | Homo sapiens fibroblast of lung male adult (45 years) | John Stamatoyannopoulos, UW | released | |
| ENCSR000EPR | DNase-seq | ENCDO269AAA | Homo sapiens fibroblast of lung male adult (45 years) | John Stamatoyannopoulos, UW | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AMZ | input library | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000DVB | input library | Homo sapiens fibroblast of lung | John Stamatoyannopoulos, UW | released | |
| ENCSR000DXA | input library | Homo sapiens fibroblast of lung male adult (45 years) | John Stamatoyannopoulos, UW | released |