Summary for ENCSR532GIR
Superseded by ENCSR612NLL
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for Leukemia Cells using donors/samples:K562
- Donor diversity
- single
- Assay
- ChIP-seq, RRBS, polyA plus RNA-seq, DNase-seq
- Target
- H3K9ac, H3K79me2, H4K20me1, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, H3K4me2, H3K9me1, H2AFZ
- Biosample summary
- Homo sapiens K562
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E123
- External resources
- None submitted
Experiments in ENCSR532GIR
Experiments
15 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000APE | ChIP-seq | H3K9me3 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKQ | ChIP-seq | H3K27me3 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKP | ChIP-seq | H3K27ac | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKR | ChIP-seq | H3K36me3 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKU | ChIP-seq | H3K4me3 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKS | ChIP-seq | H3K4me1 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000APD | ChIP-seq | H3K79me2 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000APC | ChIP-seq | H2AFZ | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKX | ChIP-seq | H4K20me1 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKT | ChIP-seq | H3K4me2 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000AKV | ChIP-seq | H3K9ac | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000DFK | RRBS | Homo sapiens K562 | Richard Myers, HAIB | released | ||
| ENCSR000EPC | DNase-seq | Homo sapiens K562 | John Stamatoyannopoulos, UW | archived | ||
| ENCSR000AKW | ChIP-seq | H3K9me1 | Homo sapiens K562 | Bradley Bernstein, Broad | released | |
| ENCSR000CPH | polyA plus RNA-seq | Homo sapiens K562 | Thomas Gingeras, CSHL | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AKY | input library | Homo sapiens K562 | Bradley Bernstein, Broad | released |