Summary for ENCSR493GDU
doi:10.17989/ENCSR493GDU
Summary
- Status
- released
- Description
- Reference epigenome for human testis (37 year old male)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, microRNA-seq, DNase-seq, ATAC-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3, CTCF
- Biosample summary
- Homo sapiens testis tissue male adult (37 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR493GDU
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|
ENCSR029KNZ | RNA-seq | Homo sapiens testis tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
ENCSR136ZQZ | ChIP-seq | H3K27ac | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR210NKB | ATAC-seq | Homo sapiens testis tissue male adult (37 years) | Michael Snyder, Stanford | released | ||
ENCSR229WIW | small RNA-seq | Homo sapiens testis tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
ENCSR376JOC | ChIP-seq | H3K9me3 | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR503QSX | ChIP-seq | H3K27me3 | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR561MYM | ChIP-seq | H3K36me3 | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR611DJQ | ChIP-seq | H3K4me3 | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR753RME | ChIP-seq | CTCF | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
ENCSR806NNG | whole-genome shotgun bisulfite sequencing | Homo sapiens testis tissue male adult (37 years) | Richard Myers, HAIB | released | ||
ENCSR866ODX | DNase-seq | Homo sapiens testis tissue male adult (37 years) | John Stamatoyannopoulos, UW | released | ||
ENCSR915GVH | microRNA-seq | Homo sapiens testis tissue male adult (37 years) | Ali Mortazavi, UCI | released | ||
ENCSR956VQB | ChIP-seq | H3K4me1 | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR215WNN | input library | Homo sapiens testis tissue male adult (37 years) | Bradley Bernstein, Broad | released |