Summary for ENCSR483HNI
doi:10.17989/ENCSR483HNI
Summary
- Status
- released
- Description
- Reference epigenome for human gastroesophageal sphincter (37 year old male)
- Donor diversity
- single
- Assay
- RNA-seq, small RNA-seq, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, EP300, POLR2AphosphoS5, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens gastroesophageal sphincter tissue male adult (37 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR483HNI
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR037GFN | ChIP-seq | H3K4me3 | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR134KZX | ChIP-seq | H3K4me1 | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR186NVR | ChIP-seq | CTCF | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR353MNV | ChIP-seq | H3K36me3 | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR414TPL | ChIP-seq | POLR2A | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR528ZKN | RNA-seq | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR551MLB | ChIP-seq | EP300 | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR600TOW | ChIP-seq | H3K27ac | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR646HQQ | small RNA-seq | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR916JAC | ChIP-seq | POLR2AphosphoS5 | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR939CJE | ChIP-seq | H3K9me3 | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR965BLU | ChIP-seq | H3K27me3 | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Bradley Bernstein, Broad | released |
Control experiments
5 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR343GIV | input library | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR262CPH | input library | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR483GTS | input library | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR976KYQ | input library | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR810YKX | input library | Homo sapiens gastroesophageal sphincter tissue male adult (37 years) | Richard Myers, HAIB | released |