Summary for ENCSR477LDX
doi:10.17989/ENCSR477LDX
Summary
- Status
- released
- Description
- Reference epigenome for human H1-derived neural cell
- Donor diversity
- single
- Assay
- polyA plus RNA-seq, small RNA-seq, ChIP-seq
- Target
- H3K27me3, POLR2AphosphoS5, H3K4me1, EP300, H3K27ac, H3K36me3, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens neural cell originated from H1
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR477LDX
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR822CEA | ChIP-seq | CTCF | Homo sapiens neural cell originated from H1 | Michael Snyder, Stanford | released | |
| ENCSR000BTW | ChIP-seq | POLR2AphosphoS5 | Homo sapiens neural cell originated from H1 | Richard Myers, HAIB | released | |
| ENCSR843ZUP | ChIP-seq | EP300 | Homo sapiens neural cell originated from H1 | Michael Snyder, Stanford | released | |
| ENCSR000CVR | small RNA-seq | Homo sapiens neural cell originated from H1 | Thomas Gingeras, CSHL | released | ||
| ENCSR405NQJ | ChIP-seq | H3K9me3 | Homo sapiens neural cell originated from H1 | Bradley Bernstein, Broad | released | |
| ENCSR654VRX | ChIP-seq | H3K27me3 | Homo sapiens neural cell originated from H1 | Bradley Bernstein, Broad | released | |
| ENCSR714KGG | ChIP-seq | H3K36me3 | Homo sapiens neural cell originated from H1 | Bradley Bernstein, Broad | released | |
| ENCSR329NAJ | ChIP-seq | H3K4me1 | Homo sapiens neural cell originated from H1 | Bradley Bernstein, Broad | archived | |
| ENCSR608VNA | ChIP-seq | H3K4me3 | Homo sapiens neural cell originated from H1 | Bradley Bernstein, Broad | released | |
| ENCSR124VOE | ChIP-seq | H3K27ac | Homo sapiens neural cell originated from H1 | Bradley Bernstein, Broad | released | |
| ENCSR292TAP | polyA plus RNA-seq | Homo sapiens neural cell originated from H1 | Thomas Gingeras, CSHL | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR634PYN | input library | Homo sapiens neural cell originated from H1 | Michael Snyder, Stanford | released | |
| ENCSR000BVS | input library | Homo sapiens neural cell originated from H1 | Richard Myers, HAIB | released | |
| ENCSR308JFE | input library | Homo sapiens neural cell originated from H1 | Bradley Bernstein, Broad | released |