Summary for ENCSR472NAV
doi:10.17989/ENCSR472NAV
Summary
- Status
- released
- Description
- Reference epigenome for human esophagus muscularis mucosa (37 year old male)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, DNase-seq, small RNA-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, EP300, H3K4me3, CTCF
- Biosample summary
- Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR472NAV
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR182CBU | RNA-seq | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR185JEP | ChIP-seq | H3K36me3 | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR188HXK | ChIP-seq | H3K27me3 | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR217KAL | ChIP-seq | POLR2AphosphoS5 | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR233DGJ | small RNA-seq | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR360BLQ | ChIP-seq | EP300 | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR522MTS | ChIP-seq | H3K27ac | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR525JJM | ChIP-seq | H3K4me1 | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR559KAB | ChIP-seq | CTCF | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Michael Snyder, Stanford | released | |
| ENCSR621MTP | ChIP-seq | H3K4me3 | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR821VGC | ChIP-seq | H3K9me3 | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR944JCE | DNase-seq | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | John Stamatoyannopoulos, UW | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR147KFH | input library | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Bradley Bernstein, Broad | released | |
| ENCSR373YFT | input library | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR014XSP | input library | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Richard Myers, HAIB | released | |
| ENCSR522KYV | input library | Homo sapiens esophagus muscularis mucosa tissue male adult (37 years) | Michael Snyder, Stanford | released |