Summary for ENCSR420BKD
doi:10.17989/ENCSR420BKD
Summary
- Status
- released
- Description
- Reference epigenome for mouse intestine (0 day postnatal)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, CTCF, H3K27ac, H3K9ac, H3K9me3, H3K27me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl intestine tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR420BKD
Experiments
13 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR079GOY | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | ||
| ENCSR002ZAG | ChIP-seq | CTCF | ENCDO956IXV | Mus musculus strain B6NCrl intestine tissue postnatal (0 days) | Richard Myers, HAIB | released | |
| ENCSR946RLM | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR159RVN | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR198ACZ | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR389EYR | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR353IFP | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Joe Ecker, Salk | released | ||
| ENCSR672UQX | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR333ZWB | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR331XCE | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl intestine tissue postnatal (0 days) | Barbara Wold, Caltech | released | ||
| ENCSR483KOD | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR642VYW | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR832DUZ | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl intestine tissue postnatal (0 days) | Ali Mortazavi, UCI | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR862ZBY | input library | Mus musculus strain B6NCrl intestine tissue postnatal (0 days) | Richard Myers, HAIB | released | |
| ENCSR898PML | input library | Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue postnatal (0 days) | Bing Ren, UCSD | released |