Summary for reference epigenome series ENCSR380ZPW

Summary

Status
released
Description
Reference epigenome for human esophagus squamous epithelium (54 year old male)
Donor diversity
single
Assay
ChIP-seq, whole-genome shotgun bisulfite sequencing, RNA-seq
Biosample summary
esophagus squamous epithelium (Homo sapiens)

Attribution

ENCODE3 project
Lab
ENCODE Consortium
Award
U41HG006992 (J. Michael Cherry, Stanford)
Project
ENCODE
External resources

Experiments in reference epigenome series ENCSR380ZPW

Accession
Assay
Target
Description
Lab
Status
Cart
ENCSR012KZWChIP-seqH3K4me3Bradley Bernstein, Broad
released
ENCSR463NADChIP-seqH3K27acBradley Bernstein, Broad
released
ENCSR450FRIChIP-seqCTCFCTCF ChIP-seq on human esophagus squamous epitheliumMichael Snyder, Stanford
released
ENCSR734ZOZChIP-seqPOLR2APOLR2A ChIP-seq on human esophagus squamous epitheliumMichael Snyder, Stanford
released
ENCSR853BXBwhole-genome shotgun bisulfite sequencingRichard Myers, HAIB
released
ENCSR474TRGRNA-seqThe libraries contained in this Experiment come from tissue sub-sections from the mucosa of the esophagus obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.Thomas Gingeras, CSHL
released
ENCSR262TBNRNA-seqThe libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.Thomas Gingeras, CSHL
released
ENCSR644XSSChIP-seqBradley Bernstein, Broad
released