Summary for ENCSR380ZPW
doi:10.17989/ENCSR380ZPW
Summary
- Status
- released
- Description
- Reference epigenome for human esophagus squamous epithelium (54 year old male)
- Donor diversity
- single
- Assay
- RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, ChIP-seq
- Target
- H3K27me3, H3K27ac, POLR2A, CTCF, H3K4me3
- Biosample summary
- Homo sapiens esophagus squamous epithelium tissue male adult (54 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR380ZPW
Experiments
8 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR012KZW | ChIP-seq | H3K4me3 | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Bradley Bernstein, Broad | released | |
| ENCSR262TBN | small RNA-seq | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR450FRI | ChIP-seq | CTCF | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Michael Snyder, Stanford | released | |
| ENCSR463NAD | ChIP-seq | H3K27ac | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Bradley Bernstein, Broad | released | |
| ENCSR474TRG | RNA-seq | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR734ZOZ | ChIP-seq | POLR2A | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Michael Snyder, Stanford | released | |
| ENCSR853BXB | whole-genome shotgun bisulfite sequencing | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Richard Myers, HAIB | released | ||
| ENCSR024JJL | ChIP-seq | H3K27me3 | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR644XSS | input library | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Bradley Bernstein, Broad | released | |
| ENCSR153OQA | input library | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Michael Snyder, Stanford | released | |
| ENCSR581RPO | input library | Homo sapiens esophagus squamous epithelium tissue male adult (54 years) | Michael Snyder, Stanford | released |