Summary for ENCSR339JWY
doi:10.17989/ENCSR339JWY
Supersedes ENCSR663TPA
Summary
- Status
- released
- Description
- Reference epigenome for human skeletal muscle myoblast
- Donor diversity
- composite
- Assay
- ChIP-seq, RNA-seq, polyA plus RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3, CTCF
- Biosample summary
- skeletal muscle myoblast primary cell
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR339JWY
Experiments
11 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|---|
ENCSR444WHQ | RNA-seq | ENCDO094AAA | Homo sapiens skeletal muscle myoblast | Thomas Gingeras, CSHL | released | ||
ENCSR000ANE | ChIP-seq | CTCF | ENCDO341XKY | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released | |
ENCSR000COY | polyA plus RNA-seq | ENCDO094AAA | Homo sapiens skeletal muscle myoblast | Thomas Gingeras, CSHL | released | ||
ENCSR000EOO | DNase-seq | ENCDO094AAA | Homo sapiens skeletal muscle myoblast | John Stamatoyannopoulos, UW | released | ||
ENCSR000ANR | ChIP-seq | H3K9me3 | ENCDO341XKY | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released | |
ENCSR000ANK | ChIP-seq | H3K4me3 | ENCDO341XKY | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released | |
ENCSR000ANF | ChIP-seq | H3K27ac | ENCDO341XKY | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released | |
ENCSR000ANI | ChIP-seq | H3K4me1 | ENCDO341XKY | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released | |
ENCSR000ANH | ChIP-seq | H3K36me3 | ENCDO341XKY | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released | |
ENCSR000ANG | ChIP-seq | H3K27me3 | ENCDO341XKY | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released | |
ENCSR328TBS | whole-genome shotgun bisulfite sequencing | ENCDO094AAA | Homo sapiens skeletal muscle myoblast | Richard Myers, HAIB | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR000ANN | input library | Homo sapiens skeletal muscle myoblast male adult (22 years) | Bradley Bernstein, Broad | released |