Summary for ENCSR309SGV
Superseded by ENCSR361KMF
Summary
- Status
- archived
- Description
- Reference epigenome for human HCT116 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, polyA plus RNA-seq, microRNA counts, microRNA-seq, DNase-seq, RRBS
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3
- Biosample summary
- Homo sapiens HCT116
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR309SGV
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000ENM | DNase-seq | Homo sapiens HCT116 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000CWM | polyA plus RNA-seq | Homo sapiens HCT116 | Barbara Wold, Caltech | released | ||
| ENCSR000DFS | RRBS | Homo sapiens HCT116 | Richard Myers, HAIB | released | ||
| ENCSR000FCQ | ChIP-seq | H3K36me3 | Homo sapiens HCT116 | Peggy Farnham, USC | released | |
| ENCSR000FCP | ChIP-seq | H3K9me3 | Homo sapiens HCT116 | Peggy Farnham, USC | released | |
| ENCSR000EUS | ChIP-seq | H3K4me1 | Homo sapiens HCT116 | Peggy Farnham, USC | released | |
| ENCSR000EUT | ChIP-seq | H3K27ac | Homo sapiens HCT116 | Peggy Farnham, USC | released | |
| ENCSR810BDB | ChIP-seq | H3K27me3 | Homo sapiens HCT116 | Bradley Bernstein, Broad | released | |
| ENCSR650SEP | microRNA-seq | Homo sapiens HCT116 | Ali Mortazavi, UCI | released | ||
| ENCSR165GUQ | microRNA counts | Homo sapiens HCT116 | Ali Mortazavi, UCI | released | ||
| ENCSR000DTQ | ChIP-seq | H3K4me3 | Homo sapiens HCT116 | John Stamatoyannopoulos, UW | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000EUX | input library | Homo sapiens HCT116 | Peggy Farnham, USC | released | |
| ENCSR198WIH | input library | Homo sapiens HCT116 | Bradley Bernstein, Broad | released | |
| ENCSR000DTP | input library | Homo sapiens HCT116 | John Stamatoyannopoulos, UW | released |