Summary for ENCSR289LSP
Superseded by ENCSR194DQD
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for Umbilical Vein Endothelial Primary Cells using donors/samples:HUVEC
- Donor diversity
- composite
- Assay
- polyA plus RNA-seq, DNase-seq, ChIP-seq
- Target
- H3K27me3, H3K9me1, H3K4me1, H3K27ac, H4K20me1, H3K79me2, H3K36me3, H2AFZ, H3K9ac, H3K4me2, H3K9me3, H3K4me3
- Biosample summary
- endothelial cell of umbilical vein primary cell
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E122
- External resources
- None submitted
Experiments in ENCSR289LSP
Experiments
14 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR000COZ | polyA plus RNA-seq | ENCDO341AAA, ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein male newborn and newborn | Thomas Gingeras, CSHL | released | ||
| ENCSR000AKK | ChIP-seq | H3K27me3 | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000AKL | ChIP-seq | H3K4me1 | ENCDO560UMK, ENCDO466MPW | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000AKN | ChIP-seq | H3K4me3 | ENCDO560UMK, ENCDO466MPW | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ATB | ChIP-seq | H3K9me3 | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ALB | ChIP-seq | H3K27ac | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ALC | ChIP-seq | H3K36me3 | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000EOQ | DNase-seq | ENCDO930BXC | Homo sapiens endothelial cell of umbilical vein newborn | John Stamatoyannopoulos, UW | released | ||
| ENCSR000ASD | ChIP-seq | H3K79me2 | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ALD | ChIP-seq | H3K9ac | ENCDO560UMK, ENCDO466MPW | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000AKM | ChIP-seq | H3K4me2 | ENCDO560UMK, ENCDO466MPW | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ASC | ChIP-seq | H2AFZ | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ALF | ChIP-seq | H4K20me1 | ENCDO466MPW, ENCDO560UMK | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released | |
| ENCSR000ALE | ChIP-seq | H3K9me1 | ENCDO560UMK, ENCDO466MPW | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000ALG | input library | Homo sapiens endothelial cell of umbilical vein newborn | Bradley Bernstein, Broad | released |