Summary for ENCSR256OEH
Superseded by ENCSR046XHQ
Summary
- Status
- archived
- Description
- Reference epigenome for human SK-N-SH cell line
- Donor diversity
- single
- Assay
- DNase-seq, polyA plus RNA-seq, RRBS, small RNA-seq, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens SK-N-SH
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR256OEH
Experiments
10 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000DDY | RRBS | Homo sapiens SK-N-SH | Richard Myers, HAIB | released | ||
| ENCSR000CTT | polyA plus RNA-seq | Homo sapiens SK-N-SH | Thomas Gingeras, CSHL | released | ||
| ENCSR000FCV | ChIP-seq | H3K36me3 | Homo sapiens SK-N-SH | Peggy Farnham, USC | released | |
| ENCSR000ELQ | DNase-seq | Homo sapiens SK-N-SH | Gregory Crawford, Duke | released | ||
| ENCSR000FCT | ChIP-seq | H3K9me3 | Homo sapiens SK-N-SH | Peggy Farnham, USC | released | |
| ENCSR000FCU | ChIP-seq | H3K27ac | Homo sapiens SK-N-SH | Peggy Farnham, USC | released | |
| ENCSR000FCR | ChIP-seq | H3K4me1 | Homo sapiens SK-N-SH | Peggy Farnham, USC | released | |
| ENCSR000FCS | ChIP-seq | H3K4me3 | Homo sapiens SK-N-SH | Peggy Farnham, USC | released | |
| ENCSR914QOK | ChIP-seq | H3K27me3 | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released | |
| ENCSR000CSJ | small RNA-seq | Homo sapiens SK-N-SH | Thomas Gingeras, CSHL | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000FDA | input library | Homo sapiens SK-N-SH | Peggy Farnham, USC | released | |
| ENCSR185OHN | input library | Homo sapiens SK-N-SH | Bradley Bernstein, Broad | released |