Summary for ENCSR233CXK
doi:10.17989/ENCSR233CXK
Summary
- Status
- released
- Description
- Reference epigenome for human sigmoid colon (53 year old female)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, DNase-seq, ATAC-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K9me3, EP300, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens sigmoid colon tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR233CXK
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|
ENCSR094GVZ | RNA-seq | Homo sapiens sigmoid colon tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
ENCSR150YAU | ChIP-seq | H3K36me3 | Homo sapiens sigmoid colon tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
ENCSR268ZCF | ChIP-seq | H3K27ac | Homo sapiens sigmoid colon tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
ENCSR313BMV | ChIP-seq | EP300 | Homo sapiens sigmoid colon tissue female adult (53 years) | Richard Myers, HAIB | released | |
ENCSR322JEO | ChIP-seq | POLR2A | Homo sapiens sigmoid colon tissue female adult (53 years) | Michael Snyder, Stanford | released | |
ENCSR403USE | ChIP-seq | POLR2AphosphoS5 | Homo sapiens sigmoid colon tissue female adult (53 years) | Richard Myers, HAIB | released | |
ENCSR635SLB | small RNA-seq | Homo sapiens sigmoid colon tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
ENCSR682GOI | ChIP-seq | H3K9me3 | Homo sapiens sigmoid colon tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
ENCSR812POE | ChIP-seq | H3K4me1 | Homo sapiens sigmoid colon tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
ENCSR846VLJ | ATAC-seq | Homo sapiens sigmoid colon tissue female adult (53 years) | Michael Snyder, Stanford | released | ||
ENCSR900UIP | ChIP-seq | H3K4me3 | Homo sapiens sigmoid colon tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
ENCSR925GDS | ChIP-seq | CTCF | Homo sapiens sigmoid colon tissue female adult (53 years) | Michael Snyder, Stanford | released | |
ENCSR276ITP | DNase-seq | Homo sapiens sigmoid colon tissue female adult (53 years) | John Stamatoyannopoulos, UW | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR844YME | input library | Homo sapiens sigmoid colon tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
ENCSR393DQE | input library | Homo sapiens sigmoid colon tissue female adult (53 years) | Richard Myers, HAIB | released | |
ENCSR747VNS | input library | Homo sapiens sigmoid colon tissue female adult (53 years) | Michael Snyder, Stanford | released | |
ENCSR481ZPB | input library | Homo sapiens sigmoid colon tissue female adult (53 years) | Richard Myers, HAIB | released |