Summary for ENCSR227NHZ

doi:10.17989/ENCSR227NHZ

Summary

Status
released
Description
REMC Epigenome (Class 4) for Primary T Helper Naive Cells from Peripheral Blood using donors/samples:Donor_100_7_pooled_leukopaks_Jan_7_2011; Donor_101_8_pooled_leukopaks_Jan_20_2011; TC001
Donor diversity
composite
Assay
MeDIP-seq, polyA plus RNA-seq, ChIP-seq, MRE-seq, microRNA-seq
Target
H3K27me3, H3K4me1, H3K27ac, H3K36me3, H3K4me3, Methylcytidine, H3K9me3, H3K9ac
Biosample summary
naive thymus-derived CD4-positive, alpha-beta T cell primary cell
Diseases
Not reported

Attribution

Roadmap Epigenomics Mapping Consortium
Lab
Anshul Kundaje, Stanford
Award
U01DA025956 (Roadmap Epigenomics, Baylor)
Project
Roadmap
Aliases
roadmap-epigenomics:E038
External resources
Tags
Search for all ReferenceEpigenome with internal tag ccre_inputv1

Experiments in ENCSR227NHZ

Experiments
20 experiments
Accession
Assay
Target
Donors
Biosample summary
Lab
Status
Cart
ENCSR113YFQmicroRNA-seqENCDO678FLLHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (29 years)Joseph Costello, UCSF
released
ENCSR239EBApolyA plus RNA-seqENCDO678FLLHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (29 years)Joseph Costello, UCSF
archived
ENCSR136MGMMeDIP-seqMethylcytidineENCDO897QZRHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (34 years)Joseph Costello, UCSF
archived
ENCSR113PTZMeDIP-seqMethylcytidineENCDO849FFOHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (30 years)Joseph Costello, UCSF
archived
ENCSR354HSYMeDIP-seqMethylcytidineENCDO059KVJHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (20 years)Joseph Costello, UCSF
archived
ENCSR605QPYMRE-seqENCDO897QZRHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (34 years)Joseph Costello, UCSF
archived
ENCSR255UDWMRE-seqENCDO849FFOHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (30 years)Joseph Costello, UCSF
archived
ENCSR337QDTMRE-seqENCDO059KVJHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (20 years)Joseph Costello, UCSF
archived
ENCSR351SZHChIP-seqH3K4me1ENCDO922CEJHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR485URZChIP-seqH3K27me3ENCDO922CEJHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR709WPJChIP-seqH3K9acENCDO123NFTHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (21 years)Joseph Costello, UCSF
archived
ENCSR120WKZChIP-seqH3K27acENCDO688UWB, ENCDO922CEJHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR308QIJChIP-seqH3K36me3ENCDO123NFTHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (21 years)Joseph Costello, UCSF
archived
ENCSR218HDFChIP-seqH3K27me3ENCDO688UWBHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR657SQMChIP-seqH3K4me1ENCDO688UWBHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR605SXJChIP-seqH3K36me3ENCDO922CEJHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR161XBVChIP-seqH3K4me3ENCDO922CEJ, ENCDO688UWBHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR224LFYChIP-seqH3K9me3ENCDO922CEJHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR276ZSLChIP-seqH3K9me3ENCDO688UWBHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR198YHGChIP-seqH3K36me3ENCDO688UWBHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
Control experiments
2 control experiments
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR792FSDinput libraryHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released
ENCSR644CBZinput libraryHomo sapiens naive thymus-derived CD4-positive, alpha-beta T cellBradley Bernstein, Broad
released