Summary for ENCSR227NHZ
doi:10.17989/ENCSR227NHZ
Summary
- Status
- released
- Description
- REMC Epigenome (Class 4) for Primary T Helper Naive Cells from Peripheral Blood using donors/samples:Donor_100_7_pooled_leukopaks_Jan_7_2011; Donor_101_8_pooled_leukopaks_Jan_20_2011; TC001
- Donor diversity
- composite
- Assay
- MeDIP-seq, polyA plus RNA-seq, ChIP-seq, MRE-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, H3K4me3, Methylcytidine, H3K9me3, H3K9ac
- Biosample summary
- naive thymus-derived CD4-positive, alpha-beta T cell primary cell
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E038
- External resources
Experiments in ENCSR227NHZ
Experiments
20 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|---|
ENCSR113YFQ | microRNA-seq | ENCDO678FLL | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (29 years) | Joseph Costello, UCSF | released | ||
ENCSR239EBA | polyA plus RNA-seq | ENCDO678FLL | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (29 years) | Joseph Costello, UCSF | archived | ||
ENCSR136MGM | MeDIP-seq | Methylcytidine | ENCDO897QZR | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (34 years) | Joseph Costello, UCSF | archived | |
ENCSR113PTZ | MeDIP-seq | Methylcytidine | ENCDO849FFO | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (30 years) | Joseph Costello, UCSF | archived | |
ENCSR354HSY | MeDIP-seq | Methylcytidine | ENCDO059KVJ | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (20 years) | Joseph Costello, UCSF | archived | |
ENCSR605QPY | MRE-seq | ENCDO897QZR | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (34 years) | Joseph Costello, UCSF | archived | ||
ENCSR255UDW | MRE-seq | ENCDO849FFO | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (30 years) | Joseph Costello, UCSF | archived | ||
ENCSR337QDT | MRE-seq | ENCDO059KVJ | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (20 years) | Joseph Costello, UCSF | archived | ||
ENCSR351SZH | ChIP-seq | H3K4me1 | ENCDO922CEJ | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR485URZ | ChIP-seq | H3K27me3 | ENCDO922CEJ | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR709WPJ | ChIP-seq | H3K9ac | ENCDO123NFT | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | archived | |
ENCSR120WKZ | ChIP-seq | H3K27ac | ENCDO688UWB, ENCDO922CEJ | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR308QIJ | ChIP-seq | H3K36me3 | ENCDO123NFT | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell male adult (21 years) | Joseph Costello, UCSF | archived | |
ENCSR218HDF | ChIP-seq | H3K27me3 | ENCDO688UWB | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR657SQM | ChIP-seq | H3K4me1 | ENCDO688UWB | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR605SXJ | ChIP-seq | H3K36me3 | ENCDO922CEJ | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR161XBV | ChIP-seq | H3K4me3 | ENCDO922CEJ, ENCDO688UWB | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR224LFY | ChIP-seq | H3K9me3 | ENCDO922CEJ | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR276ZSL | ChIP-seq | H3K9me3 | ENCDO688UWB | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR198YHG | ChIP-seq | H3K36me3 | ENCDO688UWB | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR792FSD | input library | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released | |
ENCSR644CBZ | input library | Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell | Bradley Bernstein, Broad | released |