Summary for ENCSR193SZM
doi:10.17989/ENCSR193SZM
Supersedes ENCSR628CIH
Summary
- Status
- released
- Description
- Reference epigenome for human keratinocyte
- Donor diversity
- single
- Assay
- ChIP-seq, DNase-seq, polyA plus RNA-seq, small RNA-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K9me3, H3K27me3, H3K4me3, CTCF
- Biosample summary
- Homo sapiens keratinocyte female
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR193SZM
Experiments
10 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000ALI | ChIP-seq | H3K4me1 | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALK | ChIP-seq | H3K27ac | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ALL | ChIP-seq | H3K27me3 | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000ARN | ChIP-seq | H3K9me3 | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR000CPL | polyA plus RNA-seq | Homo sapiens keratinocyte female | Thomas Gingeras, CSHL | released | ||
| ENCSR000CRS | small RNA-seq | Homo sapiens keratinocyte female | Thomas Gingeras, CSHL | released | ||
| ENCSR000DNC | ChIP-seq | CTCF | Homo sapiens keratinocyte female | Vishwanath Iyer, UTA | released | |
| ENCSR000DWW | ChIP-seq | H3K36me3 | Homo sapiens keratinocyte female | John Stamatoyannopoulos, UW | released | |
| ENCSR000EPQ | DNase-seq | Homo sapiens keratinocyte female | John Stamatoyannopoulos, UW | released | ||
| ENCSR970FPM | ChIP-seq | H3K4me3 | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000ALS | input library | Homo sapiens keratinocyte female | Bradley Bernstein, Broad | released | |
| ENCSR678FZH | input library | Homo sapiens keratinocyte female | Vishwanath Iyer, UTA | released | |
| ENCSR000DWT | input library | Homo sapiens keratinocyte female | John Stamatoyannopoulos, UW | released |