Summary for ENCSR189GMC
doi:10.17989/ENCSR189GMC
Summary
- Status
- released
- Description
- REMC Epigenome (Class 4) for Fetal Brain Female using donors/samples:HuFNSC01; HuFNSC02; H-22911
- Donor diversity
- composite
- Assay
- MeDIP-seq, DNase-seq, polyA plus RNA-seq, ChIP-seq, MRE-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K36me3, Methylcytidine, H3K9me3, H3K4me3
- Biosample summary
- brain tissue
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E082
- External resources
- Tags
Experiments in ENCSR189GMC
Experiments
16 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR306QCM | MRE-seq | ENCDO981EWY | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | archived | ||
| ENCSR923RUW | MRE-seq | ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | archived | ||
| ENCSR494RVF | MeDIP-seq | Methylcytidine | ENCDO981EWY | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | archived | |
| ENCSR408BTR | MeDIP-seq | Methylcytidine | ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | archived | |
| ENCSR562VPS | MeDIP-seq | Methylcytidine | ENCDO642MOA | Homo sapiens brain tissue female embryo (117 days) | Joseph Costello, UCSF | archived | |
| ENCSR776HXH | microRNA-seq | ENCDO981EWY | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released | ||
| ENCSR325SAK | microRNA-seq | ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released | ||
| ENCSR443JOD | polyA plus RNA-seq | ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | archived | ||
| ENCSR850BGX | polyA plus RNA-seq | ENCDO981EWY | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | archived | ||
| ENCSR252BHM | polyA plus RNA-seq | ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | archived | ||
| ENCSR780FXX | ChIP-seq | H3K4me3 | ENCDO981EWY, ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released | |
| ENCSR146KXZ | ChIP-seq | H3K9me3 | ENCDO981EWY, ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released | |
| ENCSR309FOO | DNase-seq | ENCDO642MOA | Homo sapiens brain tissue female embryo (117 days) | John Stamatoyannopoulos, UW | released | ||
| ENCSR997YTW | ChIP-seq | H3K27me3 | ENCDO981EWY, ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released | |
| ENCSR386JEL | ChIP-seq | H3K4me1 | ENCDO981EWY, ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released | |
| ENCSR869WSC | ChIP-seq | H3K36me3 | ENCDO981EWY, ENCDO030VWZ | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR003IGU | input library | Homo sapiens brain tissue female embryo (17 weeks) | Joseph Costello, UCSF | released |