Summary for ENCSR180QGA
doi:10.17989/ENCSR180QGA
Summary
- Status
- released
- Description
- REMC Epigenome (Class 4) for Cortex Derived Primary Cultured Neurospheres using donors/samples:HuFNSC02
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, MeDIP-seq, polyA plus RNA-seq, ChIP-seq, MRE-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K36me3, Methylcytidine, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens neurosphere female embryo (17 weeks) originated from cortex
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E053
- External resources
Experiments in ENCSR180QGA
Experiments
10 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR724PFV | microRNA-seq | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | released | ||
| ENCSR829INV | polyA plus RNA-seq | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | archived | ||
| ENCSR433SGJ | whole-genome shotgun bisulfite sequencing | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | archived | ||
| ENCSR385OSJ | MeDIP-seq | Methylcytidine | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | archived | |
| ENCSR225HOS | MRE-seq | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | archived | ||
| ENCSR100QDR | ChIP-seq | H3K4me1 | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | released | |
| ENCSR955OBN | ChIP-seq | H3K27me3 | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | released | |
| ENCSR577CDW | ChIP-seq | H3K9me3 | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | released | |
| ENCSR957CYJ | ChIP-seq | H3K4me3 | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | released | |
| ENCSR815VLQ | ChIP-seq | H3K36me3 | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR247EGR | input library | Homo sapiens neurosphere female embryo (17 weeks) originated from cortex | Joseph Costello, UCSF | released |