Summary for ENCSR177CZE
Superseded by ENCSR537GED
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for Lung Fibroblast Primary Cells using donors/samples:NHLF
- Donor diversity
- composite
- Assay
- polyA plus RNA-seq, DNase-seq, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H4K20me1, H3K79me2, H3K36me3, H2AFZ, H3K9ac, H3K4me2, H3K9me3, H3K4me3
- Biosample summary
- fibroblast of lung primary cell
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E128
- External resources
- None submitted
Experiments in ENCSR177CZE
Experiments
13 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR000AMT | ChIP-seq | H3K36me3 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMR | ChIP-seq | H3K27ac | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000CPM | polyA plus RNA-seq | ENCDO269AAA | Homo sapiens fibroblast of lung male adult (45 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR000AMS | ChIP-seq | H3K27me3 | ENCDO156MSV, ENCDO269AAA | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ARQ | ChIP-seq | H3K9me3 | ENCDO156MSV, ENCDO269AAA | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMU | ChIP-seq | H3K4me1 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMW | ChIP-seq | H3K4me3 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ASF | ChIP-seq | H3K79me2 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMX | ChIP-seq | H3K9ac | ENCDO156MSV, ENCDO269AAA | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMY | ChIP-seq | H4K20me1 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000AMV | ChIP-seq | H3K4me2 | ENCDO269AAA, ENCDO156MSV | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000ARP | ChIP-seq | H2AFZ | ENCDO156MSV, ENCDO269AAA | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released | |
| ENCSR000EPR | DNase-seq | ENCDO269AAA | Homo sapiens fibroblast of lung male adult (45 years) | John Stamatoyannopoulos, UW | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AMZ | input library | Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years) | Bradley Bernstein, Broad | released |