Summary for ENCSR134DWG
Superseded by ENCSR888GEN
Summary
- Status
- archived
- Description
- REMC Epigenome (ENCODE) for Hepatocellular Carcinoma Cell Line using donors/samples:HepG2
- Donor diversity
- single
- Assay
- ChIP-seq, RRBS, polyA plus RNA-seq, DNase-seq
- Target
- H3K9ac, H3K79me2, H4K20me1, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, H3K4me2, H2AFZ
- Biosample summary
- Homo sapiens HepG2
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E118
- External resources
- None submitted
Experiments in ENCSR134DWG
Experiments
15 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000AME | ChIP-seq | Homo sapiens HepG2 | Bradley Bernstein, Broad | archived | ||
| ENCSR000ATD | ChIP-seq | H3K9me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AMP | ChIP-seq | H3K4me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AOL | ChIP-seq | H3K27me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000APV | ChIP-seq | H3K4me1 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AMB | ChIP-seq | H3K36me3 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AMO | ChIP-seq | H3K27ac | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AOM | ChIP-seq | H3K79me2 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AMQ | ChIP-seq | H4K20me1 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AMC | ChIP-seq | H3K4me2 | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AMD | ChIP-seq | H3K9ac | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000AOK | ChIP-seq | H2AFZ | Homo sapiens HepG2 | Bradley Bernstein, Broad | released | |
| ENCSR000ENP | DNase-seq | Homo sapiens HepG2 | John Stamatoyannopoulos, UW | archived | ||
| ENCSR530RCY | RRBS | Homo sapiens HepG2 | Richard Myers, HAIB | released | ||
| ENCSR000CPE | polyA plus RNA-seq | Homo sapiens HepG2 | Thomas Gingeras, CSHL | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR055XHN | input library | Homo sapiens HepG2 | Bradley Bernstein, Broad | released |