Summary for ENCSR068MRQ
doi:10.17989/ENCSR068MRQ
Supersedes ENCSR043WJN
Summary
- Status
- released
- Description
- Reference epigenome for human HeLa-S3 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, polyA plus RNA-seq, small RNA-seq, whole-genome shotgun bisulfite sequencing, DNase-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, EP300, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens HeLa-S3
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR068MRQ
Experiments
13 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000AOA | ChIP-seq | CTCF | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR000BGO | ChIP-seq | POLR2A | Homo sapiens HeLa-S3 | Richard Myers, HAIB | released | |
| ENCSR680OFU | ChIP-seq | EP300 | Homo sapiens HeLa-S3 | Michael Snyder, Stanford | released | |
| ENCSR000CPR | polyA plus RNA-seq | Homo sapiens HeLa-S3 | Thomas Gingeras, CSHL | released | ||
| ENCSR000APB | ChIP-seq | H3K27me3 | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR000AOD | ChIP-seq | H3K36me3 | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR000AOF | ChIP-seq | H3K4me3 | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR550RTN | whole-genome shotgun bisulfite sequencing | Homo sapiens HeLa-S3 | Richard Myers, HAIB | released | ||
| ENCSR000AOC | ChIP-seq | H3K27ac | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR000AQO | ChIP-seq | H3K9me3 | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR000APW | ChIP-seq | H3K4me1 | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR959ZXU | DNase-seq | Homo sapiens HeLa-S3 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000CRQ | small RNA-seq | Homo sapiens HeLa-S3 | Thomas Gingeras, CSHL | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AOB | input library | Homo sapiens HeLa-S3 | Bradley Bernstein, Broad | released | |
| ENCSR000BMM | input library | Homo sapiens HeLa-S3 | Richard Myers, HAIB | released | |
| ENCSR580ECR | input library | Homo sapiens HeLa-S3 | Michael Snyder, Stanford | released |