Summary for ENCSR049ZYT
doi:10.17989/ENCSR049ZYT
Summary
- Status
- released
- Description
- Reference epigenome for mouse heart (0 day postnatal)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, RNA-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, CTCF, H3K27ac, H3K9ac, EP300, H3K9me3, H3K27me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl heart tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR049ZYT
Experiments
16 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR005WPU | DNase-seq | ENCDO956IXV | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | John Stamatoyannopoulos, UW | released | ||
| ENCSR035DLJ | RNA-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Thomas Gingeras, CSHL | released | ||
| ENCSR235JCY | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR373OCX | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR397YEG | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Joe Ecker, Salk | released | ||
| ENCSR451NAE | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | ||
| ENCSR488OCA | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR491NUM | ChIP-seq | CTCF | ENCDO956IXV | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | Richard Myers, HAIB | released | |
| ENCSR519DNE | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR526SEX | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | Barbara Wold, Caltech | released | ||
| ENCSR675HDX | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR777VNA | ChIP-seq | EP300 | ENCDO956IXV | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | Richard Myers, HAIB | released | |
| ENCSR790LOX | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR834DKI | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | Ali Mortazavi, UCI | released | ||
| ENCSR875ZAO | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR965JWF | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR334IOH | input library | Mus musculus strain B6NTac;B6NCrl/Lap heart tissue postnatal (0 days) | Bing Ren, UCSD | released | |
| ENCSR109LQX | input library | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | Richard Myers, HAIB | released | |
| ENCSR890SJI | input library | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | Richard Myers, HAIB | released | |
| ENCSR431KAV | input library | Mus musculus strain B6NCrl heart tissue postnatal (0 days) | Richard Myers, HAIB | released |