Summary for ENCSR044VTN
doi:10.17989/ENCSR044VTN
Summary
- Status
- released
- Description
- REMC Epigenome (Class 3) for Breast variant Human Mammary Epithelial Cells (vHMEC) using donors/samples:RM035
- Donor diversity
- single
- Assay
- MeDIP-seq, DNase-seq, polyA plus RNA-seq, ChIP-seq, MRE-seq, microRNA-seq
- Target
- H3K27me3, H3K4me1, H3K36me3, Methylcytidine, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens mammary epithelial cell female adult (18 years)
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E028
- External resources
Experiments in ENCSR044VTN
Experiments
10 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR970EAM | microRNA-seq | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | released | ||
| ENCSR929HDF | polyA plus RNA-seq | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | archived | ||
| ENCSR506YAT | MRE-seq | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | archived | ||
| ENCSR396OSD | MeDIP-seq | Methylcytidine | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | archived | |
| ENCSR134HVI | ChIP-seq | H3K27me3 | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | released | |
| ENCSR597RXT | ChIP-seq | H3K36me3 | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | released | |
| ENCSR521FND | ChIP-seq | H3K4me1 | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | released | |
| ENCSR807YQE | ChIP-seq | H3K4me3 | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | released | |
| ENCSR668GKQ | ChIP-seq | H3K9me3 | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | released | |
| ENCSR228VNQ | DNase-seq | Homo sapiens mammary epithelial cell female adult (18 years) | John Stamatoyannopoulos, UW | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR596DLY | input library | Homo sapiens mammary epithelial cell female adult (18 years) | Joseph Costello, UCSF | released |