Summary for ENCSR006XBO
doi:10.17989/ENCSR006XBO
Summary
- Status
- released
- Description
- Reference epigenome for mouse embryonic facial prominence (14.5 day embryonic)
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, DNase-seq, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
- Target
- H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K27me3, H3K9me3, H3K4me1, H3K4me2
- Biosample summary
- B6NCrl embryonic facial prominence tissue
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR006XBO
Experiments
13 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|---|
| ENCSR876SYO | ATAC-seq | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | ||
| ENCSR706SZI | ChIP-seq | H3K9me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR199LBO | microRNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl embryonic facial prominence tissue embryo (14.5 days) | Ali Mortazavi, UCI | released | ||
| ENCSR823VEE | polyA plus RNA-seq | ENCDO956IXV | Mus musculus strain B6NCrl embryonic facial prominence tissue embryo (14.5 days) | Barbara Wold, Caltech | released | ||
| ENCSR473ZCM | whole-genome shotgun bisulfite sequencing | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Joe Ecker, Salk | released | ||
| ENCSR604DCI | ChIP-seq | H3K36me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR457HDY | ChIP-seq | H3K27me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR964RRJ | ChIP-seq | H3K9ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR481SGM | ChIP-seq | H3K27ac | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR059LYY | ChIP-seq | H3K4me3 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR886DWH | ChIP-seq | H3K4me2 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR972WEN | ChIP-seq | H3K4me1 | ENCDO469XMJ | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released | |
| ENCSR959HKR | DNase-seq | ENCDO956IXV | Mus musculus strain B6NCrl embryonic facial prominence tissue embryo (14.5 days) | John Stamatoyannopoulos, UW | released |
Control experiments
1 control experiment
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR329ZEN | input library | Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue embryo (14.5 days) | Bing Ren, UCSD | released |