Summary for ENCSR000FYQ
doi:10.17989/ENCSR000FYQ
Summary
- Status
- released
- Description
- REMC Epigenome (Class 2) for Liver using donors/samples:3; 4; 5
- Donor diversity
- composite
- Assay
- whole-genome shotgun bisulfite sequencing, ChIP-seq, polyA plus RNA-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, H3K4me3, H3K9me3, H3K9ac
- Biosample summary
- liver tissue
- Diseases
- Not reported
Attribution
Roadmap Epigenomics Mapping Consortium
- Lab
- Anshul Kundaje, Stanford
- Award
- U01DA025956 (Roadmap Epigenomics, Baylor)
- Project
- Roadmap
- Aliases
- roadmap-epigenomics:E066
- External resources
Experiments in ENCSR000FYQ
Experiments
21 experiments
Accession | Assay | Target | Donors | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|---|---|
ENCSR191ZHL | whole-genome shotgun bisulfite sequencing | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | archived | ||
ENCSR020YHO | whole-genome shotgun bisulfite sequencing | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | archived | ||
ENCSR241SMW | polyA plus RNA-seq | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | archived | ||
ENCSR203RKZ | ChIP-seq | H3K4me1 | ENCDO232KQV | Homo sapiens liver tissue male adult (78 years) | Bradley Bernstein, Broad | released | |
ENCSR642HII | ChIP-seq | H3K4me1 | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released | |
ENCSR853JYB | ChIP-seq | H3K9me3 | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released | |
ENCSR489RQV | ChIP-seq | H3K9me3 | ENCDO232KQV | Homo sapiens liver tissue male adult (78 years) | Bradley Bernstein, Broad | released | |
ENCSR111OHT | ChIP-seq | H3K4me1 | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | released | |
ENCSR213DKS | ChIP-seq | H3K36me3 | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released | |
ENCSR682MXX | ChIP-seq | H3K9ac | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released | |
ENCSR021BCU | ChIP-seq | H3K9ac | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | released | |
ENCSR275DXO | ChIP-seq | H3K27me3 | ENCDO232KQV | Homo sapiens liver tissue male adult (78 years) | Bradley Bernstein, Broad | released | |
ENCSR458WIH | ChIP-seq | H3K4me3 | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | released | |
ENCSR678LND | ChIP-seq | H3K27ac | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released | |
ENCSR351DLF | ChIP-seq | H3K9me3 | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | released | |
ENCSR460RHN | ChIP-seq | H3K36me3 | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | released | |
ENCSR904LIL | ChIP-seq | H3K27me3 | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released | |
ENCSR230IMS | ChIP-seq | H3K27ac | ENCDO832GKP | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | released | |
ENCSR585KLQ | ChIP-seq | H3K36me3 | ENCDO232KQV | Homo sapiens liver tissue male adult (78 years) | Bradley Bernstein, Broad | released | |
ENCSR520BUX | ChIP-seq | H3K4me3 | ENCDO232KQV | Homo sapiens liver tissue male adult (78 years) | Bradley Bernstein, Broad | released | |
ENCSR803JYI | ChIP-seq | H3K4me3 | ENCDO776UMN | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
---|---|---|---|---|---|
ENCSR942ZRO | input library | Homo sapiens liver tissue male adult (78 years) | Bradley Bernstein, Broad | released | |
ENCSR236NLU | input library | Homo sapiens liver tissue female adult (25 years) | Bradley Bernstein, Broad | released | |
ENCSR687HYO | input library | Homo sapiens liver tissue male adult (31 years) | Bradley Bernstein, Broad | released |