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Reference Epigenome Matrix
Project data from mouse tissue, cell line, primary cell, and in vitro differentiated cell biosamples organized as reference epigenomes following guidelines set out by IHEC.
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Homo sapiens
Mus musculus
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Mus musculus clickable body map
Assay
Biosample
polyA plus RNA-seq
total RNA-seq
microRNA-seq
DNase-seq
ATAC-seq
WGBS
TF ChIP-seq
CTCF
POLR2A
EP300
POLR2AphosphoS5
Histone ChIP-seq
H3K4me1
H3K4me3
H3K27ac
H3K27me3
H3K36me3
H3K9me3
H3K9ac
H3K4me2
tissue
heart
Search tissue, heart for polyA plus RNA-seq
Search tissue, heart for total RNA-seq
Search tissue, heart for microRNA-seq
Search tissue, heart for DNase-seq
Search tissue, heart for ATAC-seq
Search tissue, heart for WGBS
Search tissue, heart for TF ChIP-seq, CTCF
Search tissue, heart for TF ChIP-seq, POLR2A
Search tissue, heart for TF ChIP-seq, EP300
Search tissue, heart for Histone ChIP-seq, H3K4me1
Search tissue, heart for Histone ChIP-seq, H3K4me3
Search tissue, heart for Histone ChIP-seq, H3K27ac
Search tissue, heart for Histone ChIP-seq, H3K27me3
Search tissue, heart for Histone ChIP-seq, H3K36me3
Search tissue, heart for Histone ChIP-seq, H3K9me3
Search tissue, heart for Histone ChIP-seq, H3K9ac
Search tissue, heart for Histone ChIP-seq, H3K4me2
liver
Search tissue, liver for polyA plus RNA-seq
Search tissue, liver for total RNA-seq
Search tissue, liver for microRNA-seq
Search tissue, liver for DNase-seq
Search tissue, liver for ATAC-seq
Search tissue, liver for WGBS
Search tissue, liver for TF ChIP-seq, CTCF
Search tissue, liver for TF ChIP-seq, POLR2A
Search tissue, liver for TF ChIP-seq, EP300
Search tissue, liver for Histone ChIP-seq, H3K4me1
Search tissue, liver for Histone ChIP-seq, H3K4me3
Search tissue, liver for Histone ChIP-seq, H3K27ac
Search tissue, liver for Histone ChIP-seq, H3K27me3
Search tissue, liver for Histone ChIP-seq, H3K36me3
Search tissue, liver for Histone ChIP-seq, H3K9me3
Search tissue, liver for Histone ChIP-seq, H3K9ac
Search tissue, liver for Histone ChIP-seq, H3K4me2
forebrain
Search tissue, forebrain for polyA plus RNA-seq
Search tissue, forebrain for total RNA-seq
Search tissue, forebrain for microRNA-seq
Search tissue, forebrain for DNase-seq
Search tissue, forebrain for ATAC-seq
Search tissue, forebrain for WGBS
Search tissue, forebrain for TF ChIP-seq, CTCF
Search tissue, forebrain for Histone ChIP-seq, H3K4me1
Search tissue, forebrain for Histone ChIP-seq, H3K4me3
Search tissue, forebrain for Histone ChIP-seq, H3K27ac
Search tissue, forebrain for Histone ChIP-seq, H3K27me3
Search tissue, forebrain for Histone ChIP-seq, H3K36me3
Search tissue, forebrain for Histone ChIP-seq, H3K9me3
Search tissue, forebrain for Histone ChIP-seq, H3K9ac
Search tissue, forebrain for Histone ChIP-seq, H3K4me2
midbrain
Search tissue, midbrain for polyA plus RNA-seq
Search tissue, midbrain for total RNA-seq
Search tissue, midbrain for microRNA-seq
Search tissue, midbrain for DNase-seq
Search tissue, midbrain for ATAC-seq
Search tissue, midbrain for WGBS
Search tissue, midbrain for TF ChIP-seq, CTCF
Search tissue, midbrain for Histone ChIP-seq, H3K4me1
Search tissue, midbrain for Histone ChIP-seq, H3K4me3
Search tissue, midbrain for Histone ChIP-seq, H3K27ac
Search tissue, midbrain for Histone ChIP-seq, H3K27me3
Search tissue, midbrain for Histone ChIP-seq, H3K36me3
Search tissue, midbrain for Histone ChIP-seq, H3K9me3
Search tissue, midbrain for Histone ChIP-seq, H3K9ac
Search tissue, midbrain for Histone ChIP-seq, H3K4me2
hindbrain
Search tissue, hindbrain for polyA plus RNA-seq
Search tissue, hindbrain for total RNA-seq
Search tissue, hindbrain for microRNA-seq
Search tissue, hindbrain for DNase-seq
Search tissue, hindbrain for ATAC-seq
Search tissue, hindbrain for WGBS
Search tissue, hindbrain for TF ChIP-seq, CTCF
Search tissue, hindbrain for Histone ChIP-seq, H3K4me1
Search tissue, hindbrain for Histone ChIP-seq, H3K4me3
Search tissue, hindbrain for Histone ChIP-seq, H3K27ac
Search tissue, hindbrain for Histone ChIP-seq, H3K27me3
Search tissue, hindbrain for Histone ChIP-seq, H3K36me3
Search tissue, hindbrain for Histone ChIP-seq, H3K9me3
Search tissue, hindbrain for Histone ChIP-seq, H3K9ac
Search tissue, hindbrain for Histone ChIP-seq, H3K4me2
limb
Search tissue, limb for polyA plus RNA-seq
Search tissue, limb for microRNA-seq
Search tissue, limb for DNase-seq
Search tissue, limb for ATAC-seq
Search tissue, limb for WGBS
Search tissue, limb for TF ChIP-seq, POLR2A
Search tissue, limb for Histone ChIP-seq, H3K4me1
Search tissue, limb for Histone ChIP-seq, H3K4me3
Search tissue, limb for Histone ChIP-seq, H3K27ac
Search tissue, limb for Histone ChIP-seq, H3K27me3
Search tissue, limb for Histone ChIP-seq, H3K36me3
Search tissue, limb for Histone ChIP-seq, H3K9me3
Search tissue, limb for Histone ChIP-seq, H3K9ac
Search tissue, limb for Histone ChIP-seq, H3K4me2
embryonic facial prominence
Search tissue, embryonic facial prominence for polyA plus RNA-seq
Search tissue, embryonic facial prominence for microRNA-seq
Search tissue, embryonic facial prominence for DNase-seq
Search tissue, embryonic facial prominence for ATAC-seq
Search tissue, embryonic facial prominence for WGBS
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me1
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me3
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K27ac
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K27me3
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K36me3
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K9me3
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K9ac
Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me2
neural tube
Search tissue, neural tube for polyA plus RNA-seq
Search tissue, neural tube for microRNA-seq
Search tissue, neural tube for DNase-seq
Search tissue, neural tube for ATAC-seq
Search tissue, neural tube for WGBS
Search tissue, neural tube for Histone ChIP-seq, H3K4me1
Search tissue, neural tube for Histone ChIP-seq, H3K4me3
Search tissue, neural tube for Histone ChIP-seq, H3K27ac
Search tissue, neural tube for Histone ChIP-seq, H3K27me3
Search tissue, neural tube for Histone ChIP-seq, H3K36me3
Search tissue, neural tube for Histone ChIP-seq, H3K9me3
Search tissue, neural tube for Histone ChIP-seq, H3K9ac
Search tissue, neural tube for Histone ChIP-seq, H3K4me2
kidney
Search tissue, kidney for polyA plus RNA-seq
Search tissue, kidney for microRNA-seq
Search tissue, kidney for DNase-seq
Search tissue, kidney for ATAC-seq
Search tissue, kidney for WGBS
Search tissue, kidney for TF ChIP-seq, CTCF
Search tissue, kidney for TF ChIP-seq, POLR2A
Search tissue, kidney for Histone ChIP-seq, H3K4me1
Search tissue, kidney for Histone ChIP-seq, H3K4me3
Search tissue, kidney for Histone ChIP-seq, H3K27ac
Search tissue, kidney for Histone ChIP-seq, H3K27me3
Search tissue, kidney for Histone ChIP-seq, H3K36me3
Search tissue, kidney for Histone ChIP-seq, H3K9me3
Search tissue, kidney for Histone ChIP-seq, H3K9ac
Search tissue, kidney for Histone ChIP-seq, H3K4me2
lung
Search tissue, lung for polyA plus RNA-seq
Search tissue, lung for microRNA-seq
Search tissue, lung for DNase-seq
Search tissue, lung for ATAC-seq
Search tissue, lung for WGBS
Search tissue, lung for TF ChIP-seq, CTCF
Search tissue, lung for TF ChIP-seq, EP300
Search tissue, lung for Histone ChIP-seq, H3K4me1
Search tissue, lung for Histone ChIP-seq, H3K4me3
Search tissue, lung for Histone ChIP-seq, H3K27ac
Search tissue, lung for Histone ChIP-seq, H3K27me3
Search tissue, lung for Histone ChIP-seq, H3K36me3
Search tissue, lung for Histone ChIP-seq, H3K9me3
Search tissue, lung for Histone ChIP-seq, H3K9ac
Search tissue, lung for Histone ChIP-seq, H3K4me2
cell line
MEL
Search cell line, MEL for polyA plus RNA-seq
Search cell line, MEL for total RNA-seq
Search cell line, MEL for DNase-seq
Search cell line, MEL for TF ChIP-seq, CTCF
Search cell line, MEL for TF ChIP-seq, POLR2A
Search cell line, MEL for TF ChIP-seq, EP300
Search cell line, MEL for TF ChIP-seq, POLR2AphosphoS5
Search cell line, MEL for Histone ChIP-seq, H3K4me1
Search cell line, MEL for Histone ChIP-seq, H3K4me3
Search cell line, MEL for Histone ChIP-seq, H3K27ac
Search cell line, MEL for Histone ChIP-seq, H3K27me3
Search cell line, MEL for Histone ChIP-seq, H3K36me3
Search cell line, MEL for Histone ChIP-seq, H3K9me3
Search cell line, MEL for Histone ChIP-seq, H3K9ac
CH12.LX
Search cell line, CH12.LX for polyA plus RNA-seq
Search cell line, CH12.LX for total RNA-seq
Search cell line, CH12.LX for DNase-seq
Search cell line, CH12.LX for TF ChIP-seq, CTCF
Search cell line, CH12.LX for TF ChIP-seq, POLR2A
Search cell line, CH12.LX for TF ChIP-seq, EP300
Search cell line, CH12.LX for Histone ChIP-seq, H3K4me1
Search cell line, CH12.LX for Histone ChIP-seq, H3K4me3
Search cell line, CH12.LX for Histone ChIP-seq, H3K27ac
Search cell line, CH12.LX for Histone ChIP-seq, H3K27me3
Search cell line, CH12.LX for Histone ChIP-seq, H3K36me3
Search cell line, CH12.LX for Histone ChIP-seq, H3K9me3
Search cell line, CH12.LX for Histone ChIP-seq, H3K9ac
Search cell line, CH12.LX for Histone ChIP-seq, H3K4me2
ES-Bruce4
Search cell line, ES-Bruce4 for polyA plus RNA-seq
Search cell line, ES-Bruce4 for TF ChIP-seq, CTCF
Search cell line, ES-Bruce4 for TF ChIP-seq, POLR2A
Search cell line, ES-Bruce4 for TF ChIP-seq, EP300
Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me1
Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me3
Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27ac
Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27me3
Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K36me3
Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9me3
Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9ac
G1E
Search cell line, G1E for polyA plus RNA-seq
Search cell line, G1E for total RNA-seq
Search cell line, G1E for DNase-seq
Search cell line, G1E for ATAC-seq
Search cell line, G1E for TF ChIP-seq, CTCF
Search cell line, G1E for TF ChIP-seq, POLR2AphosphoS5
Search cell line, G1E for Histone ChIP-seq, H3K4me1
Search cell line, G1E for Histone ChIP-seq, H3K4me3
Search cell line, G1E for Histone ChIP-seq, H3K27me3
Search cell line, G1E for Histone ChIP-seq, H3K36me3
Search cell line, G1E for Histone ChIP-seq, H3K9me3
G1E-ER4
Search cell line, G1E-ER4 for polyA plus RNA-seq
Search cell line, G1E-ER4 for total RNA-seq
Search cell line, G1E-ER4 for DNase-seq
Search cell line, G1E-ER4 for ATAC-seq
Search cell line, G1E-ER4 for TF ChIP-seq, CTCF
Search cell line, G1E-ER4 for TF ChIP-seq, POLR2AphosphoS5
Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me1
Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me3
Search cell line, G1E-ER4 for Histone ChIP-seq, H3K27me3
Search cell line, G1E-ER4 for Histone ChIP-seq, H3K36me3
Search cell line, G1E-ER4 for Histone ChIP-seq, H3K9me3
ES-E14
Search cell line, ES-E14 for total RNA-seq
Search cell line, ES-E14 for DNase-seq
Search cell line, ES-E14 for Histone ChIP-seq, H3K4me1
Search cell line, ES-E14 for Histone ChIP-seq, H3K4me3
Search cell line, ES-E14 for Histone ChIP-seq, H3K27ac
Search cell line, ES-E14 for Histone ChIP-seq, H3K36me3
Search cell line, ES-E14 for Histone ChIP-seq, H3K9me3
Search cell line, ES-E14 for Histone ChIP-seq, H3K9ac
primary cell
bone marrow macrophage
Search primary cell, bone marrow macrophage for polyA plus RNA-seq
Search primary cell, bone marrow macrophage for TF ChIP-seq, CTCF
Search primary cell, bone marrow macrophage for TF ChIP-seq, POLR2A
Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me1
Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me3
Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K27ac
embryonic fibroblast
Search primary cell, embryonic fibroblast for polyA plus RNA-seq
Search primary cell, embryonic fibroblast for TF ChIP-seq, CTCF
Search primary cell, embryonic fibroblast for TF ChIP-seq, POLR2A
Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me1
Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me3
Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K27ac