Reference Epigenome Matrix

Showing 1236 results

Assay
Biosample
polyA plus RNA-seqtotal RNA-seqmicroRNA-seqDNase-seqATAC-seqWGBSTF ChIP-seqCTCFPOLR2AEP300POLR2AphosphoS5POLR2AphosphoS2Histone ChIP-seqH3K4me3H3K4me1H3K27acH3K27me3H3K36me3H3K9me3H3K9acH3K4me2
heart
Search tissue, heart for polyA plus RNA-seq Search tissue, heart for total RNA-seq Search tissue, heart for microRNA-seq Search tissue, heart for DNase-seq Search tissue, heart for ATAC-seq Search tissue, heart for WGBS Search tissue, heart for TF ChIP-seq, CTCF Search tissue, heart for TF ChIP-seq, POLR2A Search tissue, heart for TF ChIP-seq, EP300 Search tissue, heart for Histone ChIP-seq, H3K4me3 Search tissue, heart for Histone ChIP-seq, H3K4me1 Search tissue, heart for Histone ChIP-seq, H3K27ac Search tissue, heart for Histone ChIP-seq, H3K27me3 Search tissue, heart for Histone ChIP-seq, H3K36me3 Search tissue, heart for Histone ChIP-seq, H3K9me3 Search tissue, heart for Histone ChIP-seq, H3K9ac Search tissue, heart for Histone ChIP-seq, H3K4me2 
liver
Search tissue, liver for polyA plus RNA-seq Search tissue, liver for total RNA-seq Search tissue, liver for microRNA-seq Search tissue, liver for DNase-seq Search tissue, liver for ATAC-seq Search tissue, liver for WGBS Search tissue, liver for TF ChIP-seq, CTCF Search tissue, liver for TF ChIP-seq, POLR2A Search tissue, liver for TF ChIP-seq, EP300 Search tissue, liver for Histone ChIP-seq, H3K4me3 Search tissue, liver for Histone ChIP-seq, H3K4me1 Search tissue, liver for Histone ChIP-seq, H3K27ac Search tissue, liver for Histone ChIP-seq, H3K27me3 Search tissue, liver for Histone ChIP-seq, H3K36me3 Search tissue, liver for Histone ChIP-seq, H3K9me3 Search tissue, liver for Histone ChIP-seq, H3K9ac Search tissue, liver for Histone ChIP-seq, H3K4me2 
forebrain
Search tissue, forebrain for polyA plus RNA-seq Search tissue, forebrain for total RNA-seq Search tissue, forebrain for microRNA-seq Search tissue, forebrain for DNase-seq Search tissue, forebrain for ATAC-seq Search tissue, forebrain for WGBS Search tissue, forebrain for TF ChIP-seq, CTCF Search tissue, forebrain for Histone ChIP-seq, H3K4me3 Search tissue, forebrain for Histone ChIP-seq, H3K4me1 Search tissue, forebrain for Histone ChIP-seq, H3K27ac Search tissue, forebrain for Histone ChIP-seq, H3K27me3 Search tissue, forebrain for Histone ChIP-seq, H3K36me3 Search tissue, forebrain for Histone ChIP-seq, H3K9me3 Search tissue, forebrain for Histone ChIP-seq, H3K9ac Search tissue, forebrain for Histone ChIP-seq, H3K4me2 
midbrain
Search tissue, midbrain for polyA plus RNA-seq Search tissue, midbrain for total RNA-seq Search tissue, midbrain for microRNA-seq Search tissue, midbrain for DNase-seq Search tissue, midbrain for ATAC-seq Search tissue, midbrain for WGBS Search tissue, midbrain for TF ChIP-seq, CTCF Search tissue, midbrain for Histone ChIP-seq, H3K4me3 Search tissue, midbrain for Histone ChIP-seq, H3K4me1 Search tissue, midbrain for Histone ChIP-seq, H3K27ac Search tissue, midbrain for Histone ChIP-seq, H3K27me3 Search tissue, midbrain for Histone ChIP-seq, H3K36me3 Search tissue, midbrain for Histone ChIP-seq, H3K9me3 Search tissue, midbrain for Histone ChIP-seq, H3K9ac Search tissue, midbrain for Histone ChIP-seq, H3K4me2 
hindbrain
Search tissue, hindbrain for polyA plus RNA-seq Search tissue, hindbrain for total RNA-seq Search tissue, hindbrain for microRNA-seq Search tissue, hindbrain for DNase-seq Search tissue, hindbrain for ATAC-seq Search tissue, hindbrain for WGBS Search tissue, hindbrain for TF ChIP-seq, CTCF Search tissue, hindbrain for Histone ChIP-seq, H3K4me3 Search tissue, hindbrain for Histone ChIP-seq, H3K4me1 Search tissue, hindbrain for Histone ChIP-seq, H3K27ac Search tissue, hindbrain for Histone ChIP-seq, H3K27me3 Search tissue, hindbrain for Histone ChIP-seq, H3K36me3 Search tissue, hindbrain for Histone ChIP-seq, H3K9me3 Search tissue, hindbrain for Histone ChIP-seq, H3K9ac Search tissue, hindbrain for Histone ChIP-seq, H3K4me2 
limb
Search tissue, limb for polyA plus RNA-seq Search tissue, limb for microRNA-seq Search tissue, limb for DNase-seq Search tissue, limb for ATAC-seq Search tissue, limb for WGBS Search tissue, limb for TF ChIP-seq, POLR2A Search tissue, limb for Histone ChIP-seq, H3K4me3 Search tissue, limb for Histone ChIP-seq, H3K4me1 Search tissue, limb for Histone ChIP-seq, H3K27ac Search tissue, limb for Histone ChIP-seq, H3K27me3 Search tissue, limb for Histone ChIP-seq, H3K36me3 Search tissue, limb for Histone ChIP-seq, H3K9me3 Search tissue, limb for Histone ChIP-seq, H3K9ac Search tissue, limb for Histone ChIP-seq, H3K4me2 
embryonic facial prominence
Search tissue, embryonic facial prominence for polyA plus RNA-seq Search tissue, embryonic facial prominence for microRNA-seq Search tissue, embryonic facial prominence for DNase-seq Search tissue, embryonic facial prominence for ATAC-seq Search tissue, embryonic facial prominence for WGBS Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me1 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K27ac Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K27me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K36me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K9me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K9ac Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me2 
neural tube
Search tissue, neural tube for polyA plus RNA-seq Search tissue, neural tube for microRNA-seq Search tissue, neural tube for DNase-seq Search tissue, neural tube for ATAC-seq Search tissue, neural tube for WGBS Search tissue, neural tube for Histone ChIP-seq, H3K4me3 Search tissue, neural tube for Histone ChIP-seq, H3K4me1 Search tissue, neural tube for Histone ChIP-seq, H3K27ac Search tissue, neural tube for Histone ChIP-seq, H3K27me3 Search tissue, neural tube for Histone ChIP-seq, H3K36me3 Search tissue, neural tube for Histone ChIP-seq, H3K9me3 Search tissue, neural tube for Histone ChIP-seq, H3K9ac Search tissue, neural tube for Histone ChIP-seq, H3K4me2 
kidney
Search tissue, kidney for polyA plus RNA-seq Search tissue, kidney for microRNA-seq Search tissue, kidney for DNase-seq Search tissue, kidney for ATAC-seq Search tissue, kidney for WGBS Search tissue, kidney for TF ChIP-seq, CTCF Search tissue, kidney for TF ChIP-seq, POLR2A Search tissue, kidney for Histone ChIP-seq, H3K4me3 Search tissue, kidney for Histone ChIP-seq, H3K4me1 Search tissue, kidney for Histone ChIP-seq, H3K27ac Search tissue, kidney for Histone ChIP-seq, H3K27me3 Search tissue, kidney for Histone ChIP-seq, H3K36me3 Search tissue, kidney for Histone ChIP-seq, H3K9me3 Search tissue, kidney for Histone ChIP-seq, H3K9ac Search tissue, kidney for Histone ChIP-seq, H3K4me2 
lung
Search tissue, lung for polyA plus RNA-seq Search tissue, lung for microRNA-seq Search tissue, lung for DNase-seq Search tissue, lung for ATAC-seq Search tissue, lung for WGBS Search tissue, lung for TF ChIP-seq, CTCF Search tissue, lung for TF ChIP-seq, EP300 Search tissue, lung for Histone ChIP-seq, H3K4me3 Search tissue, lung for Histone ChIP-seq, H3K4me1 Search tissue, lung for Histone ChIP-seq, H3K27ac Search tissue, lung for Histone ChIP-seq, H3K27me3 Search tissue, lung for Histone ChIP-seq, H3K36me3 Search tissue, lung for Histone ChIP-seq, H3K9me3 Search tissue, lung for Histone ChIP-seq, H3K9ac Search tissue, lung for Histone ChIP-seq, H3K4me2 
MEL cell line
Search cell line, MEL cell line for polyA plus RNA-seq Search cell line, MEL cell line for total RNA-seq Search cell line, MEL cell line for DNase-seq Search cell line, MEL cell line for TF ChIP-seq, CTCF Search cell line, MEL cell line for TF ChIP-seq, POLR2A Search cell line, MEL cell line for TF ChIP-seq, EP300 Search cell line, MEL cell line for TF ChIP-seq, POLR2AphosphoS5 Search cell line, MEL cell line for Histone ChIP-seq, H3K4me3 Search cell line, MEL cell line for Histone ChIP-seq, H3K4me1 Search cell line, MEL cell line for Histone ChIP-seq, H3K27ac Search cell line, MEL cell line for Histone ChIP-seq, H3K27me3 Search cell line, MEL cell line for Histone ChIP-seq, H3K36me3 Search cell line, MEL cell line for Histone ChIP-seq, H3K9me3 Search cell line, MEL cell line for Histone ChIP-seq, H3K9ac 
CH12.LX
Search cell line, CH12.LX for polyA plus RNA-seq Search cell line, CH12.LX for total RNA-seq Search cell line, CH12.LX for DNase-seq Search cell line, CH12.LX for TF ChIP-seq, CTCF Search cell line, CH12.LX for TF ChIP-seq, POLR2A Search cell line, CH12.LX for TF ChIP-seq, EP300 Search cell line, CH12.LX for Histone ChIP-seq, H3K4me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K4me1 Search cell line, CH12.LX for Histone ChIP-seq, H3K27ac Search cell line, CH12.LX for Histone ChIP-seq, H3K27me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K36me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K9me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K9ac Search cell line, CH12.LX for Histone ChIP-seq, H3K4me2 
ES-Bruce4
Search cell line, ES-Bruce4 for polyA plus RNA-seq Search cell line, ES-Bruce4 for TF ChIP-seq, CTCF Search cell line, ES-Bruce4 for TF ChIP-seq, POLR2A Search cell line, ES-Bruce4 for TF ChIP-seq, EP300 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me1 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27ac Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K36me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9ac 
ES-E14
Search cell line, ES-E14 for total RNA-seq Search cell line, ES-E14 for DNase-seq Search cell line, ES-E14 for Histone ChIP-seq, H3K4me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K4me1 Search cell line, ES-E14 for Histone ChIP-seq, H3K27ac Search cell line, ES-E14 for Histone ChIP-seq, H3K36me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K9me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K9ac 
G1E
Search cell line, G1E for polyA plus RNA-seq Search cell line, G1E for DNase-seq Search cell line, G1E for ATAC-seq Search cell line, G1E for TF ChIP-seq, CTCF Search cell line, G1E for TF ChIP-seq, POLR2AphosphoS5 Search cell line, G1E for Histone ChIP-seq, H3K4me3 Search cell line, G1E for Histone ChIP-seq, H3K4me1 Search cell line, G1E for Histone ChIP-seq, H3K27me3 Search cell line, G1E for Histone ChIP-seq, H3K36me3 Search cell line, G1E for Histone ChIP-seq, H3K9me3 
G1E-ER4
Search cell line, G1E-ER4 for polyA plus RNA-seq Search cell line, G1E-ER4 for DNase-seq Search cell line, G1E-ER4 for ATAC-seq Search cell line, G1E-ER4 for TF ChIP-seq, CTCF Search cell line, G1E-ER4 for TF ChIP-seq, POLR2AphosphoS5 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me1 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K27me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K36me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K9me3 
E14TG2a.4
Search cell line, E14TG2a.4 for TF ChIP-seq, CTCF Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K4me3 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K4me1 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K27me3 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K36me3 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K9me3 
C2C12
Search cell line, C2C12 for polyA plus RNA-seq Search cell line, C2C12 for TF ChIP-seq, CTCF Search cell line, C2C12 for Histone ChIP-seq, H3K4me3 Search cell line, C2C12 for Histone ChIP-seq, H3K27me3 Search cell line, C2C12 for Histone ChIP-seq, H3K36me3 
bone marrow macrophage
Search primary cell, bone marrow macrophage for polyA plus RNA-seq Search primary cell, bone marrow macrophage for TF ChIP-seq, CTCF Search primary cell, bone marrow macrophage for TF ChIP-seq, POLR2A Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me3 Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me1 Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K27ac 
embryonic fibroblast
Search primary cell, embryonic fibroblast for polyA plus RNA-seq Search primary cell, embryonic fibroblast for TF ChIP-seq, CTCF Search primary cell, embryonic fibroblast for TF ChIP-seq, POLR2A Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me3 Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me1 Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K27ac 
erythroblast
Search primary cell, erythroblast for polyA plus RNA-seq Search primary cell, erythroblast for Histone ChIP-seq, H3K4me3 Search primary cell, erythroblast for Histone ChIP-seq, H3K4me1 Search primary cell, erythroblast for Histone ChIP-seq, H3K27me3 Search primary cell, erythroblast for Histone ChIP-seq, H3K36me3 Search primary cell, erythroblast for Histone ChIP-seq, H3K9me3 
megakaryocyte
Search primary cell, megakaryocyte for polyA plus RNA-seq Search primary cell, megakaryocyte for Histone ChIP-seq, H3K4me3 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K4me1 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K27me3 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K36me3 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K9me3 
myocyte
Search in vitro differentiated cells, myocyte for polyA plus RNA-seq Search in vitro differentiated cells, myocyte for TF ChIP-seq, POLR2A Search in vitro differentiated cells, myocyte for TF ChIP-seq, POLR2AphosphoS2 Search in vitro differentiated cells, myocyte for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, myocyte for Histone ChIP-seq, H3K27me3 Search in vitro differentiated cells, myocyte for Histone ChIP-seq, H3K36me3