Reference Epigenome Matrix

Project data from mouse tissue, cell line, primary cell, and in vitro differentiated cell biosamples organized as reference epigenomes following guidelines set out by IHEC.
Showing 36 results.
Assay
Biosample
polyA plus RNA-seqtotal RNA-seqmicroRNA-seqDNase-seqATAC-seqWGBSTF ChIP-seqCTCFPOLR2AEP300POLR2AphosphoS5POLR2AphosphoS2Histone ChIP-seqH3K4me3H3K4me1H3K27acH3K27me3H3K36me3H3K9me3H3K9acH3K4me2
heart
Search tissue, heart for polyA plus RNA-seq Search tissue, heart for total RNA-seq Search tissue, heart for microRNA-seq Search tissue, heart for DNase-seq Search tissue, heart for ATAC-seq Search tissue, heart for WGBS Search tissue, heart for TF ChIP-seq, CTCF Search tissue, heart for TF ChIP-seq, POLR2A Search tissue, heart for TF ChIP-seq, EP300 Search tissue, heart for Histone ChIP-seq, H3K4me3 Search tissue, heart for Histone ChIP-seq, H3K4me1 Search tissue, heart for Histone ChIP-seq, H3K27ac Search tissue, heart for Histone ChIP-seq, H3K27me3 Search tissue, heart for Histone ChIP-seq, H3K36me3 Search tissue, heart for Histone ChIP-seq, H3K9me3 Search tissue, heart for Histone ChIP-seq, H3K9ac Search tissue, heart for Histone ChIP-seq, H3K4me2 
liver
Search tissue, liver for polyA plus RNA-seq Search tissue, liver for total RNA-seq Search tissue, liver for microRNA-seq Search tissue, liver for DNase-seq Search tissue, liver for ATAC-seq Search tissue, liver for WGBS Search tissue, liver for TF ChIP-seq, CTCF Search tissue, liver for TF ChIP-seq, POLR2A Search tissue, liver for TF ChIP-seq, EP300 Search tissue, liver for Histone ChIP-seq, H3K4me3 Search tissue, liver for Histone ChIP-seq, H3K4me1 Search tissue, liver for Histone ChIP-seq, H3K27ac Search tissue, liver for Histone ChIP-seq, H3K27me3 Search tissue, liver for Histone ChIP-seq, H3K36me3 Search tissue, liver for Histone ChIP-seq, H3K9me3 Search tissue, liver for Histone ChIP-seq, H3K9ac Search tissue, liver for Histone ChIP-seq, H3K4me2 
forebrain
Search tissue, forebrain for polyA plus RNA-seq Search tissue, forebrain for total RNA-seq Search tissue, forebrain for microRNA-seq Search tissue, forebrain for DNase-seq Search tissue, forebrain for ATAC-seq Search tissue, forebrain for WGBS Search tissue, forebrain for TF ChIP-seq, CTCF Search tissue, forebrain for Histone ChIP-seq, H3K4me3 Search tissue, forebrain for Histone ChIP-seq, H3K4me1 Search tissue, forebrain for Histone ChIP-seq, H3K27ac Search tissue, forebrain for Histone ChIP-seq, H3K27me3 Search tissue, forebrain for Histone ChIP-seq, H3K36me3 Search tissue, forebrain for Histone ChIP-seq, H3K9me3 Search tissue, forebrain for Histone ChIP-seq, H3K9ac Search tissue, forebrain for Histone ChIP-seq, H3K4me2 
midbrain
Search tissue, midbrain for polyA plus RNA-seq Search tissue, midbrain for total RNA-seq Search tissue, midbrain for microRNA-seq Search tissue, midbrain for DNase-seq Search tissue, midbrain for ATAC-seq Search tissue, midbrain for WGBS Search tissue, midbrain for TF ChIP-seq, CTCF Search tissue, midbrain for Histone ChIP-seq, H3K4me3 Search tissue, midbrain for Histone ChIP-seq, H3K4me1 Search tissue, midbrain for Histone ChIP-seq, H3K27ac Search tissue, midbrain for Histone ChIP-seq, H3K27me3 Search tissue, midbrain for Histone ChIP-seq, H3K36me3 Search tissue, midbrain for Histone ChIP-seq, H3K9me3 Search tissue, midbrain for Histone ChIP-seq, H3K9ac Search tissue, midbrain for Histone ChIP-seq, H3K4me2 
hindbrain
Search tissue, hindbrain for polyA plus RNA-seq Search tissue, hindbrain for total RNA-seq Search tissue, hindbrain for microRNA-seq Search tissue, hindbrain for DNase-seq Search tissue, hindbrain for ATAC-seq Search tissue, hindbrain for WGBS Search tissue, hindbrain for TF ChIP-seq, CTCF Search tissue, hindbrain for Histone ChIP-seq, H3K4me3 Search tissue, hindbrain for Histone ChIP-seq, H3K4me1 Search tissue, hindbrain for Histone ChIP-seq, H3K27ac Search tissue, hindbrain for Histone ChIP-seq, H3K27me3 Search tissue, hindbrain for Histone ChIP-seq, H3K36me3 Search tissue, hindbrain for Histone ChIP-seq, H3K9me3 Search tissue, hindbrain for Histone ChIP-seq, H3K9ac Search tissue, hindbrain for Histone ChIP-seq, H3K4me2 
limb
Search tissue, limb for polyA plus RNA-seq Search tissue, limb for microRNA-seq Search tissue, limb for DNase-seq Search tissue, limb for ATAC-seq Search tissue, limb for WGBS Search tissue, limb for TF ChIP-seq, POLR2A Search tissue, limb for Histone ChIP-seq, H3K4me3 Search tissue, limb for Histone ChIP-seq, H3K4me1 Search tissue, limb for Histone ChIP-seq, H3K27ac Search tissue, limb for Histone ChIP-seq, H3K27me3 Search tissue, limb for Histone ChIP-seq, H3K36me3 Search tissue, limb for Histone ChIP-seq, H3K9me3 Search tissue, limb for Histone ChIP-seq, H3K9ac Search tissue, limb for Histone ChIP-seq, H3K4me2 
embryonic facial prominence
Search tissue, embryonic facial prominence for polyA plus RNA-seq Search tissue, embryonic facial prominence for microRNA-seq Search tissue, embryonic facial prominence for DNase-seq Search tissue, embryonic facial prominence for ATAC-seq Search tissue, embryonic facial prominence for WGBS Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me1 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K27ac Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K27me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K36me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K9me3 Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K9ac Search tissue, embryonic facial prominence for Histone ChIP-seq, H3K4me2 
neural tube
Search tissue, neural tube for polyA plus RNA-seq Search tissue, neural tube for microRNA-seq Search tissue, neural tube for DNase-seq Search tissue, neural tube for ATAC-seq Search tissue, neural tube for WGBS Search tissue, neural tube for Histone ChIP-seq, H3K4me3 Search tissue, neural tube for Histone ChIP-seq, H3K4me1 Search tissue, neural tube for Histone ChIP-seq, H3K27ac Search tissue, neural tube for Histone ChIP-seq, H3K27me3 Search tissue, neural tube for Histone ChIP-seq, H3K36me3 Search tissue, neural tube for Histone ChIP-seq, H3K9me3 Search tissue, neural tube for Histone ChIP-seq, H3K9ac Search tissue, neural tube for Histone ChIP-seq, H3K4me2 
kidney
Search tissue, kidney for polyA plus RNA-seq Search tissue, kidney for microRNA-seq Search tissue, kidney for DNase-seq Search tissue, kidney for ATAC-seq Search tissue, kidney for WGBS Search tissue, kidney for TF ChIP-seq, CTCF Search tissue, kidney for TF ChIP-seq, POLR2A Search tissue, kidney for Histone ChIP-seq, H3K4me3 Search tissue, kidney for Histone ChIP-seq, H3K4me1 Search tissue, kidney for Histone ChIP-seq, H3K27ac Search tissue, kidney for Histone ChIP-seq, H3K27me3 Search tissue, kidney for Histone ChIP-seq, H3K36me3 Search tissue, kidney for Histone ChIP-seq, H3K9me3 Search tissue, kidney for Histone ChIP-seq, H3K9ac Search tissue, kidney for Histone ChIP-seq, H3K4me2 
lung
Search tissue, lung for polyA plus RNA-seq Search tissue, lung for microRNA-seq Search tissue, lung for DNase-seq Search tissue, lung for ATAC-seq Search tissue, lung for WGBS Search tissue, lung for TF ChIP-seq, CTCF Search tissue, lung for TF ChIP-seq, EP300 Search tissue, lung for Histone ChIP-seq, H3K4me3 Search tissue, lung for Histone ChIP-seq, H3K4me1 Search tissue, lung for Histone ChIP-seq, H3K27ac Search tissue, lung for Histone ChIP-seq, H3K27me3 Search tissue, lung for Histone ChIP-seq, H3K36me3 Search tissue, lung for Histone ChIP-seq, H3K9me3 Search tissue, lung for Histone ChIP-seq, H3K9ac Search tissue, lung for Histone ChIP-seq, H3K4me2 
MEL
Search cell line, MEL for polyA plus RNA-seq Search cell line, MEL for total RNA-seq Search cell line, MEL for DNase-seq Search cell line, MEL for TF ChIP-seq, CTCF Search cell line, MEL for TF ChIP-seq, POLR2A Search cell line, MEL for TF ChIP-seq, EP300 Search cell line, MEL for TF ChIP-seq, POLR2AphosphoS5 Search cell line, MEL for Histone ChIP-seq, H3K4me3 Search cell line, MEL for Histone ChIP-seq, H3K4me1 Search cell line, MEL for Histone ChIP-seq, H3K27ac Search cell line, MEL for Histone ChIP-seq, H3K27me3 Search cell line, MEL for Histone ChIP-seq, H3K36me3 Search cell line, MEL for Histone ChIP-seq, H3K9me3 Search cell line, MEL for Histone ChIP-seq, H3K9ac 
CH12.LX
Search cell line, CH12.LX for polyA plus RNA-seq Search cell line, CH12.LX for total RNA-seq Search cell line, CH12.LX for DNase-seq Search cell line, CH12.LX for TF ChIP-seq, CTCF Search cell line, CH12.LX for TF ChIP-seq, POLR2A Search cell line, CH12.LX for TF ChIP-seq, EP300 Search cell line, CH12.LX for Histone ChIP-seq, H3K4me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K4me1 Search cell line, CH12.LX for Histone ChIP-seq, H3K27ac Search cell line, CH12.LX for Histone ChIP-seq, H3K27me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K36me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K9me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K9ac Search cell line, CH12.LX for Histone ChIP-seq, H3K4me2 
ES-Bruce4
Search cell line, ES-Bruce4 for polyA plus RNA-seq Search cell line, ES-Bruce4 for TF ChIP-seq, CTCF Search cell line, ES-Bruce4 for TF ChIP-seq, POLR2A Search cell line, ES-Bruce4 for TF ChIP-seq, EP300 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me1 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27ac Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K36me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9ac 
G1E
Search cell line, G1E for polyA plus RNA-seq Search cell line, G1E for total RNA-seq Search cell line, G1E for DNase-seq Search cell line, G1E for ATAC-seq Search cell line, G1E for TF ChIP-seq, CTCF Search cell line, G1E for TF ChIP-seq, POLR2AphosphoS5 Search cell line, G1E for Histone ChIP-seq, H3K4me3 Search cell line, G1E for Histone ChIP-seq, H3K4me1 Search cell line, G1E for Histone ChIP-seq, H3K27me3 Search cell line, G1E for Histone ChIP-seq, H3K36me3 Search cell line, G1E for Histone ChIP-seq, H3K9me3 
G1E-ER4
Search cell line, G1E-ER4 for polyA plus RNA-seq Search cell line, G1E-ER4 for total RNA-seq Search cell line, G1E-ER4 for DNase-seq Search cell line, G1E-ER4 for ATAC-seq Search cell line, G1E-ER4 for TF ChIP-seq, CTCF Search cell line, G1E-ER4 for TF ChIP-seq, POLR2AphosphoS5 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me1 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K27me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K36me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K9me3 
ES-E14
Search cell line, ES-E14 for total RNA-seq Search cell line, ES-E14 for DNase-seq Search cell line, ES-E14 for Histone ChIP-seq, H3K4me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K4me1 Search cell line, ES-E14 for Histone ChIP-seq, H3K27ac Search cell line, ES-E14 for Histone ChIP-seq, H3K36me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K9me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K9ac 
C2C12
Search cell line, C2C12 for polyA plus RNA-seq Search cell line, C2C12 for TF ChIP-seq, CTCF Search cell line, C2C12 for Histone ChIP-seq, H3K4me3 Search cell line, C2C12 for Histone ChIP-seq, H3K27me3 Search cell line, C2C12 for Histone ChIP-seq, H3K36me3 
E14TG2a.4
Search cell line, E14TG2a.4 for TF ChIP-seq, CTCF Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K4me3 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K4me1 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K27me3 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K36me3 Search cell line, E14TG2a.4 for Histone ChIP-seq, H3K9me3 
bone marrow macrophage
Search primary cell, bone marrow macrophage for polyA plus RNA-seq Search primary cell, bone marrow macrophage for TF ChIP-seq, CTCF Search primary cell, bone marrow macrophage for TF ChIP-seq, POLR2A Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me3 Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me1 Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K27ac 
embryonic fibroblast
Search primary cell, embryonic fibroblast for polyA plus RNA-seq Search primary cell, embryonic fibroblast for TF ChIP-seq, CTCF Search primary cell, embryonic fibroblast for TF ChIP-seq, POLR2A Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me3 Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me1 Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K27ac 
erythroblast
Search primary cell, erythroblast for polyA plus RNA-seq Search primary cell, erythroblast for Histone ChIP-seq, H3K4me3 Search primary cell, erythroblast for Histone ChIP-seq, H3K4me1 Search primary cell, erythroblast for Histone ChIP-seq, H3K27me3 Search primary cell, erythroblast for Histone ChIP-seq, H3K36me3 Search primary cell, erythroblast for Histone ChIP-seq, H3K9me3 
megakaryocyte
Search primary cell, megakaryocyte for polyA plus RNA-seq Search primary cell, megakaryocyte for Histone ChIP-seq, H3K4me3 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K4me1 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K27me3 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K36me3 Search primary cell, megakaryocyte for Histone ChIP-seq, H3K9me3 
myocyte
Search in vitro differentiated cells, myocyte for polyA plus RNA-seq Search in vitro differentiated cells, myocyte for TF ChIP-seq, POLR2A Search in vitro differentiated cells, myocyte for TF ChIP-seq, POLR2AphosphoS2 Search in vitro differentiated cells, myocyte for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, myocyte for Histone ChIP-seq, H3K27me3 Search in vitro differentiated cells, myocyte for Histone ChIP-seq, H3K36me3