Reference Epigenome Matrix

ReferenceEpigenome-mouse badge
Project data from mouse tissue, cell line, primary cell, and in vitro differentiated cell biosamples organized as reference epigenomes following guidelines set out by IHEC.
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Assay
Biosample
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polyA plus RNA-seqTF ChIP-seqCTCFPOLR2AHistone ChIP-seqH3K27acH3K4me1H3K4me3
primary cell
bone marrow macrophage
Search primary cell, bone marrow macrophage for polyA plus RNA-seq Search primary cell, bone marrow macrophage for TF ChIP-seq, CTCF Search primary cell, bone marrow macrophage for TF ChIP-seq, POLR2A Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K27ac Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me1 Search primary cell, bone marrow macrophage for Histone ChIP-seq, H3K4me3 
embryonic fibroblast
Search primary cell, embryonic fibroblast for polyA plus RNA-seq Search primary cell, embryonic fibroblast for TF ChIP-seq, CTCF Search primary cell, embryonic fibroblast for TF ChIP-seq, POLR2A Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K27ac Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me1 Search primary cell, embryonic fibroblast for Histone ChIP-seq, H3K4me3