Reference Epigenome Matrix

ReferenceEpigenome-mouse badge
Project data from mouse tissue, cell line, primary cell, and in vitro differentiated cell biosamples organized as reference epigenomes following guidelines set out by IHEC.
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Showing 6 results.
Assay
Biosample
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polyA plus RNA-seqtotal RNA-seqDNase-seqATAC-seqTF ChIP-seqCTCFPOLR2AEP300POLR2AphosphoS5Histone ChIP-seqH3K36me3H3K4me1H3K4me3H3K9me3H3K27me3H3K27acH3K9acH3K4me2
cell line
MEL
Search cell line, MEL for polyA plus RNA-seq Search cell line, MEL for total RNA-seq Search cell line, MEL for TF ChIP-seq, CTCF Search cell line, MEL for TF ChIP-seq, POLR2A Search cell line, MEL for TF ChIP-seq, EP300 Search cell line, MEL for TF ChIP-seq, POLR2AphosphoS5 Search cell line, MEL for Histone ChIP-seq, H3K36me3 Search cell line, MEL for Histone ChIP-seq, H3K4me1 Search cell line, MEL for Histone ChIP-seq, H3K4me3 Search cell line, MEL for Histone ChIP-seq, H3K9me3 Search cell line, MEL for Histone ChIP-seq, H3K27me3 Search cell line, MEL for Histone ChIP-seq, H3K27ac Search cell line, MEL for Histone ChIP-seq, H3K9ac 
CH12.LX
Search cell line, CH12.LX for polyA plus RNA-seq Search cell line, CH12.LX for total RNA-seq Search cell line, CH12.LX for DNase-seq Search cell line, CH12.LX for TF ChIP-seq, CTCF Search cell line, CH12.LX for TF ChIP-seq, POLR2A Search cell line, CH12.LX for TF ChIP-seq, EP300 Search cell line, CH12.LX for Histone ChIP-seq, H3K36me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K4me1 Search cell line, CH12.LX for Histone ChIP-seq, H3K4me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K9me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K27me3 Search cell line, CH12.LX for Histone ChIP-seq, H3K27ac Search cell line, CH12.LX for Histone ChIP-seq, H3K9ac Search cell line, CH12.LX for Histone ChIP-seq, H3K4me2 
ES-Bruce4
Search cell line, ES-Bruce4 for polyA plus RNA-seq Search cell line, ES-Bruce4 for TF ChIP-seq, CTCF Search cell line, ES-Bruce4 for TF ChIP-seq, POLR2A Search cell line, ES-Bruce4 for TF ChIP-seq, EP300 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K36me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me1 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K4me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27me3 Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K27ac Search cell line, ES-Bruce4 for Histone ChIP-seq, H3K9ac 
G1E
Search cell line, G1E for polyA plus RNA-seq Search cell line, G1E for total RNA-seq Search cell line, G1E for DNase-seq Search cell line, G1E for ATAC-seq Search cell line, G1E for TF ChIP-seq, CTCF Search cell line, G1E for TF ChIP-seq, POLR2AphosphoS5 Search cell line, G1E for Histone ChIP-seq, H3K36me3 Search cell line, G1E for Histone ChIP-seq, H3K4me1 Search cell line, G1E for Histone ChIP-seq, H3K4me3 Search cell line, G1E for Histone ChIP-seq, H3K9me3 Search cell line, G1E for Histone ChIP-seq, H3K27me3 
G1E-ER4
Search cell line, G1E-ER4 for polyA plus RNA-seq Search cell line, G1E-ER4 for total RNA-seq Search cell line, G1E-ER4 for DNase-seq Search cell line, G1E-ER4 for ATAC-seq Search cell line, G1E-ER4 for TF ChIP-seq, CTCF Search cell line, G1E-ER4 for TF ChIP-seq, POLR2AphosphoS5 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K36me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me1 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K4me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K9me3 Search cell line, G1E-ER4 for Histone ChIP-seq, H3K27me3 
ES-E14
Search cell line, ES-E14 for total RNA-seq Search cell line, ES-E14 for DNase-seq Search cell line, ES-E14 for Histone ChIP-seq, H3K36me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K4me1 Search cell line, ES-E14 for Histone ChIP-seq, H3K4me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K9me3 Search cell line, ES-E14 for Histone ChIP-seq, H3K27ac Search cell line, ES-E14 for Histone ChIP-seq, H3K9ac