WGBS paired-end pipeline

  • Status: active
Title
WGBS paired-end pipeline
Assays
whole-genome shotgun bisulfite sequencing
Description
ENCODE DAC/DCC run pipeline for WGBS taking in paired-end fastqs and producing CpG, CHG and CHH methylation results. This pipeline inputs gzipped DNA-sequencing reads (fastqs) and a Bismark-transformed, Bowtie-indexed genome in a tar.gz archive file. More information at https://www.encodeproject.org/wgbs/.
Lab
ENCODE Processing Pipeline

Pipeline schematic

Documents

pipeline protocol
Description excerpt: WGBS pipeline: Includes overview, references, and spike-ins information about…
Description
WGBS pipeline: Includes overview, references, and spike-ins information about the pipeline
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford