Schatz lab variant calling pipeline for 10X libraries using Long Ranger 2.1.2: Version 2

Status
released
Title
Schatz lab variant calling pipeline for 10X libraries using Long Ranger 2.1.2: Version 2
Assays
whole genome sequencing assay
Description
This is the pipeline used in the Gingeras lab project by Michael Schatz lab to map and call variants from the 10X Genomics Chromium data. The software was largely developed by 10X Genomics.
Lab
Thomas Gingeras, CSHL
Award PI
Thomas Gingeras, CSHL

Pipeline schematic

Documents

pipeline protocol
Description excerpt: The document lists the software version and command line for the 10X data…
Description
The document lists the software version and command line for the 10X data processing using Long Ranger.
Submitted by
Carrie Davis
Lab
Thomas Gingeras, CSHL