WGBS single-end pipeline
- Status
- released
- Title
- WGBS single-end pipeline
- Assays
- whole-genome shotgun bisulfite sequencing
- Description
- ENCODE DAC/DCC run pipeline for WGBS taking in single-end fastqs and producing CpG, CHG and CHH methylation results. This pipeline inputs gzipped DNA-sequencing reads (fastqs) and a Bismark-transformed, Bowtie-indexed genome in a tar.gz archive file. More information at https://www.encodeproject.org/wgbs/.
- Lab
- ENCODE Processing Pipeline
- Award PI
- J. Michael Cherry, Stanford
- Pipeline standards
- Whole-Genome Bisulfite Sequencing Data Standards
Pipeline schematic
Documents
pipeline protocol
Description excerpt: WGBS pipeline: Includes overview, references, and spike-ins information about…
- Description
- WGBS pipeline: Includes overview, references, and spike-ins information about the pipeline
- Submitted by
- Kathrina Onate
- Lab
- J. Michael Cherry, Stanford
- Grant
- U24HG009397