RAMPAGE or CAGE (paired-end)
- Status
- released
- Title
- RAMPAGE or CAGE (paired-end)
- Assays
- RAMPAGE, CAGE
- Description
- ENCODE pipeline for paired-ended RAMPAGE or CAGE data. The pipeline can be used for libraries generated using rRNA-depleted total RNA, >200bp in size. The pipeline inputs paired-end, gzipped, RNA-sequencing reads (fastqs) and a STAR genome index tar.gz file and produces a bam file of aligned reads.
- Lab
- ENCODE Processing Pipeline
- Award PI
- J. Michael Cherry, Stanford
- Pipeline standards
- RAMPAGE and CAGE Data Standards