RAMPAGE or CAGE (paired-end)

  • Status: active
Title
RAMPAGE or CAGE (paired-end)
Assays
RAMPAGE, CAGE
Description
ENCODE pipeline for paired-ended RAMPAGE or CAGE data. The pipeline can be used for libraries generated using rRNA-depleted total RNA, >200bp in size. The pipeline inputs paired-end, gzipped, RNA-sequencing reads (fastqs) and a STAR genome index tar.gz file and produces a bam file of aligned reads.
Lab
ENCODE Processing Pipeline

Pipeline schematic

Documents

pipeline protocol
Description: RAMPAGE pipeline: Includes overview and references for the pipeline
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford
Grant
ENCODE