Data release: 23 human and 5 mouse datasets

September 12, 2014

These datasets are from ChIP-seq, iCLIP, RAMPAGE, RNA-seq, and WGBS assays

First version of the ENCODE genomics annotations

October 16, 2014

The set of annotations includes an expression matrix, transcription start sites, etc.

modENCODE and ENCODE comparison papers published

August 28, 2014

Publications comparing expression, regulatory features, and chromatin structure between fly, worm, and human

Data Release from ENCODE: 760 experiments of ChIP-seq, RNA-seq, ChIA-Pet and 3 new assay types in human and mouse

July 14, 2014

The ENCODE Data Coordination Center is pleased to announce the first public release of data from the third phase of ENCODE.

Updated data release policy

March 24, 2014

Community may freely download, analyze and publish results based on any ENCODE data without restrictions as soon as they are released.

Data release: 13 human and 3 mouse datasets

September 29, 2014

All 16 datasets come from RNA-seq

Data release: 114 human and 98 mouse datasets

December 17, 2014

Includes ChIP-seq, RNA-seq, WGBS, and more

Create custom track hubs from a search result

November 19, 2014

Data from a search results of assays can now be visualized at the UCSC Genome Browser.

Visualize tracks on the UCSC Genome Browser via track-hubs-on-the-fly

June 16, 2014

The ability to visualize tracks at the UCSC Genome Browser via track hubs has been released

New ENCODE portal released

August 19, 2014

We are pleased to announce the release of the new ENCODE portal

ENCODE data with expanded metadata released on new DCC portal

February 13, 2014

The metadata associated with biosamples and assays have been mapped to ontologies.

Data release: 85 human datasets

October 16, 2014

All shRNA knockdown followed by RNA-seq assays

Updates to publications using ENCODE data

December 1, 2014

The publication page at the ENCODE Portal has been updated to include the supplemental sites

Data release: 88 human and 11 mouse datasets

November 20, 2014

We are pleased to announce that the following datasets have been released on the ENCODE Portal:

Mouse ENCODE Consortium papers published

November 19, 2014

Recent findings from the mouse ENCODE Consortium are now published

Antibody characterization standard updated

March 24, 2014

The updated antibody characterization document is available

35 Total Released Datasets

December 8, 2014

10 human RNA-seq and 25 mouse RNA- and ChIP-seq

Antibody pages updated

October 9, 2014

New features on the page include a listing of all cell types, in any species, that have been characterized using the antibody lot, etc.